Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5590 140 5e-29 seq6255 111 2e-20 seq4772 93.3 7e-15 >seq5590 Length=1329 Score = 140 bits (154), Expect = 5e-29 Identities = 194/269 (72%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| |||| | |||| || || |||||||| || || |||||||| || | Sbjct 311 CGCTAAGCGTCACCGCA-AGGTCTTGCGCGACAACATCCAGGGCATTACCAAGCCCGCCA 253 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||| |||| || || || || ||||||||| | || || | |||| || |||| Sbjct 252 TCCGCCGTTTGGCCCGCCGAGGCGGTGTCAAGCGTATTTCGGGCCTCATCTACGAGGAGA 193 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| |||||||| ||| ||| |||| ||| | || ||| |||| Sbjct 192 CCCGCGGTGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACTCCGTCACCTACACCG 133 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| ||||| || | || | |||||||| | || || || | Sbjct 132 AGCACGCCCGCCGCAAGACCGTCACGGCCCTCGACGTGGTCTATGCCCTCAAGCGCCAGG 73 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| | || || ||||| ||||| Sbjct 72 GACGTACCCTCTACGGCTTTGGTGGTTAA 44 >seq6255 Length=467 Score = 111 bits (122), Expect = 2e-20 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || ||||||||||| ||||||||||| || ||||||||| ||||||| || || Sbjct 167 CTCCGCGACAACATCCAAGGCATCACCAAGCCGGCCATCCGTCGTTTGGCTCGCCGAGGC 108 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| |||| || | |||| || |||| ||| | ||| | ||| | ||| Sbjct 107 GGGGTGAAGCGTATCTCGGGCCTCATCTACGAGGAGACTCGCGGTGTGCTCAAGGTGTTC 48 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGC 16617 ||| ||| || |||| ||| | || || ||||||||||| Sbjct 47 CTCGAGAATGTCATCCGTGACTCCGTCACTTACACCGAGCACGC 4 >seq4772 Length=6212 Score = 93.3 bits (102), Expect = 7e-15 Identities = 166/241 (69%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| ||||| ||||||||||| ||||||||||| | ||| || || || || || |||| Sbjct 4232 TCTTGCGAGACAACATCCAAGGCATCACCAAGCCCGTTATTCGCCGCCTCGCCCGCCGTG 4291 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 |||| |||||||| | || || || | || || ||| || | || || ||| Sbjct 4292 GTGGTGTCAAGCGCATTTCGGGGCTGATTTACGAGGAGGCGCGGGGGGTCATGTTCGTCT 4351 Query 16572 TCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTG 16631 | || ||| ||||||| || || || | || | | |||||| || ||||| | Sbjct 4352 TTCTGGAGAATGTTATCCGCGACGCGGTCGAGTACTCTGGGCACGCGCGCCGCAAGACCG 4411 Query 16632 TCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTG 16691 ||||| || | ||| | || ||||| | || || || || || | | | || || |||| Sbjct 4412 TCACCGCCCTCGATGTGGTGTATGCCCTCAAGCGCCACGGACGGACGCTCTACGGCTTTG 4471 Query 16692 G 16692 | Sbjct 4472 G 4472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79053447722163