Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq566 598 5e-166 seq288 378 9e-100 seq620 223 4e-53 seq49 86.0 8e-12 >seq566 Length=2184 Score = 598 bits (662), Expect = 5e-166 Identities = 739/1008 (73%), Gaps = 2/1008 (0%) Strand=Plus/Plus Query 137877 GATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTTTT 137936 ||||||||| | ||||||||||| || |||||| | |||||||| || || || | || Sbjct 604 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGCCTTTTATTATTC 663 Query 137937 CCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCTGG 137996 || || || | | | || ||||||| ||| | || || || || ||||||||| ||| Sbjct 664 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTGG 723 Query 137997 TACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTGTT 138056 || || || || || || ||| ||| || ||||| || ||| | || | ||| || Sbjct 724 TATACACATGGATTAGCATCTTCTTACCTAGAAGGATGCAACTTCTTAACTGTAGCGGTA 783 Query 138057 TCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAA 138116 || || ||||| | |||||||||||| | || || | ||||| ||||| | ||| Sbjct 784 TCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGGGACCTGAAGCACAA 843 Query 138117 GGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGG 138176 |||||| || || ||| | ||| |||| ||| | ||| ||||| | || | || || Sbjct 844 GGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATCGCATTACATGGT 903 Query 138177 GCCTTTAGTCTGATTGGATTCATGCTT-CGCCAGTTTGAGATCTCTCGTCTGGTAGGCAT 138235 || ||| || | ||||||||| || || || || || |||||| ||||||| ||||| || Sbjct 904 GCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGTAT 962 Query 138236 CCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCT 138295 ||||| || |||||||| ||||||||||| || || || || ||||| || ||| | Sbjct 963 TCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTCGTTTCTGTATTCTT 1022 Query 138296 GATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAAT 138355 || |||||| | || ||| | ||||||||||| ||||| ||||| || ||||| || Sbjct 1023 AATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCTAT 1082 Query 138356 CTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATAT 138415 ||||| ||| | || ||| | || ||||||||||||||||| || ||||| || ||||| Sbjct 1083 TTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAACCCATTCCATAT 1142 Query 138416 GATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGT 138475 ||||||||||||||| ||| | |||||||| | | | ||| |||||||| ||||| || Sbjct 1143 GATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATTCATGGAGCTACTGT 1202 Query 138476 AGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTAC 138535 |||||| || | | ||||||||| || |||| || || || ||| ||| || Sbjct 1203 AGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCAAC 1262 Query 138536 TCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGG 138595 ||| ||||||||| ||||||||||| || || || | | |||||| ||||| || || Sbjct 1263 ACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTCGG 1322 Query 138596 AATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGGG 138655 | ||||| ||| || ||||||||||||||||| ||| | |||||||| || | || Sbjct 1323 TGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAACAGG 1382 Query 138656 TCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATTT 138715 | | ||||| ||| | |||||||| | ||| | || | || || |||| || || || Sbjct 1383 TTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACGACTT 1442 Query 138716 CGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGAA 138775 |||||| |||||| |||||||||| |||||||| ||||| || || |||||||| || || Sbjct 1443 CGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAA 1502 Query 138776 CATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCACGAAAA 138835 || | | || |||||| | | | |||||||| | || ||||| || ||||| Sbjct 1503 TATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGACCAACCACATGAAAA 1562 Query 138836 CTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGATA 138883 |||||| || || || || || || ||| | || ||||| || | ||| Sbjct 1563 CTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATA 1610 >seq288 Length=849 Score = 378 bits (418), Expect = 9e-100 Identities = 427/572 (75%), Gaps = 0/572 (0%) Strand=Plus/Plus Query 135365 TGGGAACAGTTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTT 135424 ||||| | |||||| ||| | || ||||| || ||||| | || | |||||||| Sbjct 276 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 335 Query 135425 GGAACGCTGATGATTCCTACTCTTCTCGCAGCTGCTATCTGCTTTATTGTTGCTTTCATC 135484 || | ||||| || || | | ||||| | | |||||| || | ||||| ||| Sbjct 336 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTTATC 395 Query 135485 GCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTAC 135544 ||||||||||| || ||||| ||||| ||||| ||||| |||||||| || || | ||| Sbjct 396 GCTGCACCTCCAGTTGATATCGACGGTATCCGTGAACCAGTTGCTGGATCACTTTTATAC 455 Query 135545 GGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTC 135604 ||||| ||||||||| ||||||| ||||| ||| | ||| | ||||| |||||||| Sbjct 456 GGAAACAACATCATCACTGGTGCAGTTATTCCTAGTTCTAACTCTATCGGTATTCACTTC 515 Query 135605 TATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAA 135664 || || | ||||||||||| ||| | || |||||||| || || ||||||||||| ||| Sbjct 516 TACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 575 Query 135665 CTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTC 135724 || || || || |||||| | | ||||| | |||||||| || || |||||||| Sbjct 576 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 635 Query 135725 TCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCT 135784 ||||| | || ||||| |||||||||| || |||| |||||| || || || || Sbjct 636 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 695 Query 135785 GCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCG 135844 || |||| || ||| | || ||||| | ||||||||| ||| |||||||||||| Sbjct 696 GCATCTGCAGTATTCTTAGTTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCT 755 Query 135845 CTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTC 135904 | || |||||||| ||||| |||| |||| | || ||||| ||||||||||||||||| Sbjct 756 TTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 815 Query 135905 ATGCATCCTTTCCACATGTTGGGAGTTGCTGG 135936 ||||| || ||||| ||| || |||||||| Sbjct 816 ATGCACCCATTCCATATGGCTGGTGTTGCTGG 847 >seq620 Length=282 Score = 223 bits (246), Expect = 4e-53 Identities = 218/281 (78%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 135941 TTCGGTGGTTCTCTGTTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGT 136000 || ||||| ||| | ||| ||||||||| || |||||||| || |||||| | | ||| Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 136001 GAGACGACTGAGGTAGAATCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACT 136060 || || || | | ||| ||||| |||||||| ||||| ||||||||||| ||| Sbjct 62 GAAACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACT 121 Query 136061 TACAACATTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTC 136120 |||||||| || ||||| || |||||||| || ||| | ||||||||||| ||| ||| Sbjct 122 TACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTTC 181 Query 136121 AACAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTT 136180 |||||||||||| | ||||||| ||| | ||||||||||| ||||| ||||||||||| Sbjct 182 AACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTA 241 Query 136181 GCTGCCCTGGGCGTATCTACGATGGCGTTCAACCTCAATGG 136221 |||| || || || ||| ||||| |||||| | ||||| Sbjct 242 ACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 86.0 bits (94), Expect = 8e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 136198 TACGATGGCGTTCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGG 136257 ||| ||||| |||||| | ||||| |||||||||||||| || |||| | |||| Sbjct 2141 TACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAAGG 2082 Query 136258 TCGTGTACTCAACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGAT 136317 || || ||||||| ||||| || | | || ||||||| | | |||||||| || || Sbjct 2081 CCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAAT 2022 Query 136318 GCACGAGCGT 136327 |||||| ||| Sbjct 2021 GCACGAACGT 2012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627781250166400