Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq288 342 1e-89 seq620 120 9e-23 >seq288 Length=849 Score = 342 bits (378), Expect = 1e-89 Identities = 408/554 (74%), Gaps = 0/554 (0%) Strand=Plus/Plus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| |||| || || || ||||| | || | |||||||| || || | ||||| || Sbjct 294 TGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCA 353 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 ||| || | ||||| | ||||| || |||| |||||||| ||||| || || ||| Sbjct 354 ACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGAT 413 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || || || || ||||| |||||| | || || | | ||||||||||| || || || Sbjct 414 ATCGACGGTATCCGTGAACCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACT 473 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || ||||| |||| || || || | || || | ||||| || || | |||||||| Sbjct 474 GGTGCAGTTATTCCTAGTTCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCT 533 Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598 | ||||||| |||||| | |||||||| ||||| || |||||||| || || |||||| Sbjct 534 GCGTCTTTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTC 593 Query 19599 TTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATG 19658 ||| |||| ||||| ||| || | | |||||||| ||| | ||||| ||| Sbjct 594 TTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATG 653 Query 19659 AGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTC 19718 | || ||||| |||||||| | |||| ||| || | ||||| ||| || || | Sbjct 654 CGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTA 713 Query 19719 GTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACT 19778 ||||||||| | || ||||| || || ||||||||||||| | ||||| ||||||||| Sbjct 714 GTTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACT 773 Query 19779 TTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATG 19838 || ||||| ||||| |||||||||||||||||||| || |||||||| || ||||| ||| Sbjct 774 TTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATG 833 Query 19839 CTCGGTGTTGCTGG 19852 ||||||||||| Sbjct 834 GCTGGTGTTGCTGG 847 >seq620 Length=282 Score = 120 bits (132), Expect = 9e-23 Identities = 195/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 19857 TTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAG 19916 || ||||| ||| | ||| |||||||||||| | | || || || | ||| Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 19917 GAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACA 19976 ||||| || | ||||| ||||| || || || ||||| ||||| ||||| || Sbjct 62 GAAACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACT 121 Query 19977 TATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTC 20036 || || || || ||||||||||| |||||||| | || || || ||||| || |||| Sbjct 122 TACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTTC 181 Query 20037 AATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTT 20096 || || |||||| ||||||| ||||| | ||| ||| || || || || || ||| | Sbjct 182 AACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTA 241 Query 20097 ACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGG 20137 || | | || | | |||||||| |||||| | ||||| Sbjct 242 ACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144400792629996