Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq288 441 1e-118 seq620 172 9e-38 seq49 113 7e-20 >seq288 Length=849 Score = 441 bits (488), Expect = 1e-118 Identities = 411/522 (79%), Gaps = 0/522 (0%) Strand=Plus/Plus Query 211612 GGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTA 211671 |||||||| |||||| | ||||||||| | || | || |||| ||||| ||| | Sbjct 327 GGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATC 386 Query 211672 GCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCA 211731 || || ||||| |||||||| |||||||||||||| |||||||||||||| ||||| ||| Sbjct 387 GCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTATCCGTGAACCAGTTGCTGGATCA 446 Query 211732 TTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 211791 | | || || |||||||||||| ||||||||||| |||| ||| ||| | |||||| Sbjct 447 CTTTTATACGGAAACAACATCATCACTGGTGCAGTTATTCCTAGTTCTAACTCTATCGGT 506 Query 211792 TTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGT 211851 | |||||||| || | |||||||| || || | || |||||||| ||||| |||||| Sbjct 507 ATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGGCTTTACAACGGTGGT 566 Query 211852 CCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAG 211911 |||||||| | ||| | || |||||| | | || | | ||||||||| | | Sbjct 567 CCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAA 626 Query 211912 TGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCT 211971 ||||||||| ||||||||||| |||||||||||||| | || |||| ||||| || Sbjct 627 TGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCA 686 Query 211972 GTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGAC 212031 ||| | ||||| | || |||||| | ||||||||| |||| || ||| ||||| || Sbjct 687 GTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATCGGACAAGGTAGCTTCTCTGAT 746 Query 212032 GGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACAT 212091 ||||||||||||||||| || || || |||||||||||||| ||||||||||||||||| Sbjct 747 GGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACAC 806 Query 212092 AACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGT 212133 ||||| ||||||||||||||||||||||| |||||||| ||| Sbjct 807 AACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGT 848 >seq620 Length=282 Score = 172 bits (190), Expect = 9e-38 Identities = 211/286 (74%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 212136 GTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCG 212195 ||| ||||| | |||||| ||||||||||||||||||||| |||||| | ||||| Sbjct 1 GTTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCG 60 Query 212196 TGAAACC----ACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAG 212251 |||||| || || || | | ||||| |||||||| |||||||||||||||| Sbjct 61 TGAAACTGAAGAC-GGCGTATCTGCT---AACTACGGTTACAAATTCGGACAAGAAGAAG 116 Query 212252 AGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCAT 212311 | || || |||||||| |||||||| || ||||| || | | |||||||| || || Sbjct 117 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGA 176 Query 212312 CATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTAT 212371 ||||||||| | ||||||||||||| | || | ||||| ||| | || | | Sbjct 177 GTTTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCT 236 Query 212372 GGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGG 212417 ||||||| || | ||| | | || |||||||||||| ||||||| Sbjct 237 GGTTAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 113 bits (124), Expect = 7e-20 Identities = 123/160 (77%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 212395 ACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGAT-GCATCAGG 212453 || |||||||||||| ||||||| ||||||||||||||||| ||||||||| || || | Sbjct 2140 ACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGC--CAAG 2083 Query 212454 TAAGGTTGTTC-CTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTA 212512 | || || ||||||| ||| || | ||| | || | | ||||||||||| | Sbjct 2082 GCCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAA 2023 Query 212513 TGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 |||||||| | || || ||||||||||| || || ||||| Sbjct 2022 TGCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGC 1983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807315043177960