Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq566 547 8e-151 seq288 399 2e-106 seq620 181 1e-40 seq49 89.7 6e-13 >seq566 Length=2184 Score = 547 bits (606), Expect = 8e-151 Identities = 760/1056 (72%), Gaps = 35/1056 (3%) Strand=Plus/Plus Query 171784 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 171843 |||||| | |||||| | | ||||| |||||||| |||||||||||||||| || | Sbjct 581 AAAGAGGTTTATTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTG 640 Query 171844 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 171903 | ||||| || |||||| | || || || | || ||| | || || ||||| || Sbjct 641 GTTGGTCAGGCCTTTTATTATTCCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAG 700 Query 171904 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 171963 | || ||||| || || || ||||| |||||||| | ||||| || || || || ||| Sbjct 701 GTACGACTTTTGTTACATCTTGGTATACACATGGATTAGCATCTTCTTACCTAGAAGGAT 760 Query 171964 CAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 172023 ||||| ||||||| ||| ||||||||||||| | |||||||||| || | | Sbjct 761 GCAACTTCTTAACTGTAGCGGTATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTT 820 Query 172024 TCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 172083 | ||||||||||||| |||||||||||| | || ||| ||||| | |||||| ||| Sbjct 821 TATTATGGGGACCTGAAGCACAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTAT 880 Query 172084 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTA-GACAGTTT 172142 || ||| | ||||||||||| | ||||| | || || ||| || ||| | || || Sbjct 881 GGGCTTTTATCGCATTACATGGTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTC 939 Query 172143 GAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATT 172202 ||||| || | ||||| || || ||||| || |||||| | |||||||| | | |||| Sbjct 940 GAGATCGCTCGTCTTGTAGGTATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATT 999 Query 172203 GCAGTATTCACGAGCATCT---TTC-TAATATATCCATTAGGTC-AGCATAGTTGGTTCT 172257 || |||||| | ||| ||| |||| ||||| |||| | |||| |||||||||| Sbjct 1000 GCGGTATTC----GTTTCTGTATTCTTAATCTATCCTCTAGGACAAGCA-AGTTGGTTCT 1054 Query 172258 TCGCACCTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCC 172317 |||| || ||||| || ||||| || || || | | |||||| |||| ||||||| Sbjct 1055 TCGCTCCAAGTTTTGGGGTTGCAGCTATTTTCCGCTTCTTATTATTCTTACAAGGTTTCC 1114 Query 172318 ACAATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCAT 172377 | || || ||||| ||||| ||||||||||| |||||||| || | ||||| |||| Sbjct 1115 ATAACTGGACACTTAACCCATTCCATATGATGGGCGTAGCAGGGATTTTAGGTGGTGCAT 1174 Query 172378 TACTATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAAT 172437 || ||| ||| || ||||| || || ||| | |||||| | | |||||| Sbjct 1175 TATTATCTGCAATTCATGGAGCTACTGTAGAAAACACACTATTTGAAGA----------- 1223 Query 172438 ACACTGAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAG 172497 || | | | | ||| | || ||| | || || || ||||| ||||| Sbjct 1224 ----TG--GTGATGCTGCAAAC----ACATTCCGTGCGTTTACACCAACACAATCAGAAG 1273 Query 172498 AAACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTT 172557 |||||||| ||| | || || || ||||||||||| || || || ||| |||| || | Sbjct 1274 AAACTTATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTCGGTGTAGCTTTCT 1333 Query 172558 CAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACAT 172617 | |||||| | | | |||||| | ||||| || || || || | ||| | |||||| Sbjct 1334 CTAACAAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAACAGGTTTATGGACAA 1393 Query 172618 CATCTATAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAG 172677 ||| | ||||| |||||| | ||| | || | |||||||||||||| |||||||||| Sbjct 1394 GTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACGACTTCGTATCTCAAG 1453 Query 172678 AGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTT- 172736 | | | ||||| ||||| ||||| |||||||| ||||||||||| || | |||| || Sbjct 1454 AACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAATA-TCTTATTA 1512 Query 172737 AATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTC 172796 || |||||||| ||| |||||||| | | || ||||| ||||| |||||||| ||| Sbjct 1513 AACGAAGGTATTAGATCATGGATGGCCGCACAAGACCAACCACATGAAAACTTTGTATTC 1572 Query 172797 CCAGAAGAAGTCTTGCCACGAGGCAACGCACTATAA 172832 ||||| || || || ||||| || ||||| || ||| Sbjct 1573 CCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA 1608 >seq288 Length=849 Score = 399 bits (442), Expect = 2e-106 Identities = 417/545 (77%), Gaps = 2/545 (0%) Strand=Plus/Plus Query 170686 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAAC 170745 ||| || || || | ||| | |||||||| ||||| |||||||||||| | |||| Sbjct 305 CACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAAC 364 Query 170746 TGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAAT 170805 ||| | || ||||| | || || |||||||| |||||||| ||||||||||| || Sbjct 365 AGCTACAAGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTAT 424 Query 170806 CAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGT 170865 | | ||||||||||| || || | ||||| || |||||||||||| ||||||| || | Sbjct 425 CCGTGAACCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACTGGTGCAGTTAT 484 Query 170866 TCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGA 170925 ||| ||| ||| | || || | |||||||| || | |||||||| || || | || Sbjct 485 TCCTAGTTCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGA 544 Query 170926 CGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATT-GGAA 170984 ||||||| | |||||||| ||||||||||| | || | || ||||| |||||| || Sbjct 545 CGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTT-CTTATTAGGTG 603 Query 170985 TCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGA 171044 | || ||||||||| | | |||||||| ||| | |||| ||| | ||||||| Sbjct 604 TAGCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGA 663 Query 171045 TATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCAT 171104 | | ||||| | |||||| || ||| ||||||||| |||||||||| | || || ||| Sbjct 664 TTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAA 723 Query 171105 TCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCA 171164 |||| || ||| ||||||||||||||||| ||||||| || ||||| |||||||||| Sbjct 724 TCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCA 783 Query 171165 TGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG 171224 |||| || |||||||||||||||||||| || |||||||| ||||||||||| ||||| | Sbjct 784 TGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTG 843 Query 171225 CAGGT 171229 | ||| Sbjct 844 CTGGT 848 >seq620 Length=282 Score = 181 bits (200), Expect = 1e-40 Identities = 212/282 (75%), Gaps = 7/282 (2%) Strand=Plus/Plus Query 171232 GTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAG 171291 ||| ||||| | | |||||||| |||||||||||||| || |||||| | ||||| | Sbjct 1 GTTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCG 60 Query 171292 AGAGACAACTGAGAACGA-GAGTCAA--AACTACGGCTATAAGTTCGGACAAGAAGAAGA 171348 || |||||| ||| | || |||||||| || || ||||||||||||||||| Sbjct 61 TGA---AACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGA 117 Query 171349 AACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATC 171408 ||| || ||||| || ||||| || || ||||| || | ||||||||||| || || Sbjct 118 AACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAG 177 Query 171409 ATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATG 171468 ||||||||||||||| | |||||||||||| | |||| | || || || || | || Sbjct 178 TTTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTG 237 Query 171469 GTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAA 171510 |||||| || | ||| | |||| ||||||||||| ||||| Sbjct 238 GTTAACTGCTCTTGGTGTTAGTACTATGGCATTCAA-CTTAA 278 >seq49 Length=2147 Score = 89.7 bits (98), Expect = 6e-13 Identities = 146/203 (72%), Gaps = 12/203 (6%) Strand=Plus/Minus Query 171489 GTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT-GCAAAC 171547 |||| |||||||||||| | || || ||||||||||||||||| ||||| ||| || || Sbjct 2142 GTACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAA- 2084 Query 171548 GGAAAGATTGTACCAACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAG 171605 | | || | ||||| |||| || || | ||| | || | | || ||||||| Sbjct 2083 -GGCCGCGTG-ATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAG 2026 Query 171606 TTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC---ATCTGCTGAGTCTA 171662 | ||||| ||| | || || ||||||||||| ||||| |||| |||| || ||| Sbjct 2025 TAATGCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGCCGTATCTAATG-TTCTT 1967 Query 171663 CAACAGTTGCATTAACTGCACCT 171685 | | |||||||||| || ||| Sbjct 1966 C--CTGTTGCATTAAACGCTCCT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570099209187240