Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq17508 123 3e-23 >seq17508 Length=3941 Score = 123 bits (136), Expect = 3e-23 Identities = 595/939 (63%), Gaps = 8/939 (1%) Strand=Plus/Minus Query 62874 ATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62933 || |||||| | || | | || || |||| |||||| || || ||||| | | | Sbjct 2991 ATCACAAACTTAGGCAGGACGACCGAAGCCAAATTACACACAGCCACCTCCTCCGGGCTC 2932 Query 62934 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 62993 | ||| || || ||||| || || | || || || || |||| ||| || || Sbjct 2931 GTATACTGGATAATCTCCGTACACAAGTTCGAACTGCGAATCGTCCCTAGATTCTGCTGG 2872 Query 62994 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63053 |||||||| |||||||| || |||||||| || | || || || || || ||||| Sbjct 2871 TTACTCTTCAGATTACACGCGTCTTTATAAAGCATATACGGCGTGCCCGTCTCGATCTGT 2812 Query 63054 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCT 63113 || || | |||||| ||| | | || | || | | ||| ||| | || Sbjct 2811 GAGTCCAAAATCGCGAACCACAGGTCTTGCGCACGCACGGTTTTCTTGACTCTTCCCGCT 2752 Query 63114 CTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT-GTCCAATCCAGG 63172 |||| ||| | |||| |||||| | | | || || | | |||| ||||| Sbjct 2751 TTTTCATATTGCAGGTACAGGGCCTCGAACGCCT-TGCCATGGCAGTCGCCCAAGCCAGG 2693 Query 63173 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63232 |||| ||| |||||||||||||||||| | || || |||| ||| | |||||||| | Sbjct 2692 GCATTGATCGGGACACATCAACGACCACACCCCATCCTCCTCCACCCTCTTCATAAACAA 2633 Query 63233 ATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 63291 |||||| ||||| || | ||| || ||||| | | | || || || || || Sbjct 2632 ATCAGGGATCCACAG-CCCATAGAACAGATCACGCGCCCGCGCCTCTTCCTTCCCATGAT 2574 Query 63292 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63351 | || | | || || | | | | |||||| | ||||||||| || | ||| || || | Sbjct 2573 TTTTCCTCAAGTCAAGCACCTCAAAAATATCCGCATGCCACGGCTCAATGTAAATCGCAA 2514 Query 63352 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63411 | || ||||| || || |||||||| | |||| || || | | | || | Sbjct 2513 AGGCCCCCGGCCGCTTCCCCCCGCCCTGATCAACATATCGCGCCGTCACGTCAAACACAC 2454 Query 63412 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGG 63471 || ||| || | | ||| || | || || || || ||||||| ||| | Sbjct 2453 GCAGCATCGGCACTAAACCATTGCTCGTCCCCTTCGTCCCCTTGATATAGGCTCCGTGCG 2394 Query 63472 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63531 | |||||||| | || | ||| || || || || ||| || | ||||| Sbjct 2393 CGCGAATATTGTGCACCGACAAACCAATCCCACCCGCTGCCTTACTAATCACCGCGCACT 2334 Query 63532 GTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGA--TCATGTTAAGTAGAAAACA 63589 | || ||||| ||||| || ||| | || ||| ||| ||| | | |||||||| Sbjct 2333 GCTTCAACGTATCATAAATCCCCACAATCGAATC--CGACTGCATCGTCAACAGAAAACA 2276 Query 63590 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63649 |||||| ||| | || || || |||| || |||||||| || ||||| |||| Sbjct 2275 CGAAGACATCTGGGGGAAACGCGTCCCGGCATGGAACAAGGTAGGCGACGCGTGGATAAA 2216 Query 63650 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63709 ||| || | | | | | |||||||| | || | |||| ||| ||| || Sbjct 2215 CCACTTATTACTCATCAATTCATACGTCTCCAATGCCGCCTCTAAGTCCTTCCCATGTAT 2156 Query 63710 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63769 || | || || ||||| | ||||| ||| || | ||| || | ||| || | || Sbjct 2155 CCCCAACGCCACCCGCATCACCATGTACTGCGGGCGTTCCACCACCTTCTTCCCCAGCTT 2096 Query 63770 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63808 ||| | || || |||| || || || |||||||| Sbjct 2095 CAAGAGATAAGAACGCTCCATCGTCTTGAACCCAAAATA 2057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622761943289560