Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq7782 342 1e-88 seq17508 176 1e-38 >seq7782 Length=16676 Score = 342 bits (378), Expect = 1e-88 Identities = 1133/1749 (65%), Gaps = 56/1749 (3%) Strand=Plus/Plus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || ||||| ||||| ||| | ||||| || || || || ||||| ||| || || Sbjct 6303 GAGCGCCCCCAGCACATGATCATGCGCGTGGCCATCGGCATCCACAAGGAGGACGTCGAC 6362 Query 363508 GCCGCGATTGAAACATATAAGCTTCT-----AAGTGCTCGTGTATTCACGCACGCCACGC 363562 ||||| || || || ||||| || | || |||| |||||||| ||||| | Sbjct 6363 GCCGCCATCGAGACCTATAACCTCATGTCCCAAAAGCTC-----TTCACGCATGCCACTC 6417 Query 363563 CAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAA 363622 | || | | ||| || || || | || ||| | || || ||||| || || | | Sbjct 6418 CCACCCTTTTCAACGCCGGCACCCCCCGCCCGCAGCTATCCTCCTGCTTCCTCCTCACCA 6477 Query 363623 TGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCA 363682 ||||||| || |||||||| || |||| ||||| || ||| | || || || |||| Sbjct 6478 TGAAGGAGGACTCCATCGATGGCATCTACGACACCCTCAAGCAATGCGCCGCCATCTCCA 6537 Query 363683 AGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTC 363742 | || ||||| || || || || |||||||| | || || | || ||||| | Sbjct 6538 AATTCGCCGGCGGGATCGGCGTGTCCATCCACAACATCCGCGCCCGTGACTCCTACATCC 6597 Query 363743 GCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTG 363802 ||||| | || ||| || || | || |||||||| ||||| || || | || | Sbjct 6598 GCGGCTCGAACGGTACCTCCAACGGTATCGTGCCCATGCTGCGTGTCTTCAACGACACGG 6657 Query 363803 CGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGC 363862 | | ||||| |||||||| || ||||||||||| || | || || || || ||||||| Sbjct 6658 CCCGCTACGTGGACCAGGGGGGGGGAAAGCGCAAGGGCTCCTTCGCCATTTACCTCGAGC 6717 Query 363863 CTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AAACACGGGAAAAGAGGAA 363921 | || ||||| || || ||||| ||||| || || || || ||| || || ||| Sbjct 6718 CGTGGCACGCCGACATCTTCGAGTTCCTTGACCTGCGCAAGAATCAC-GGCAACGAGCTG 6776 Query 363922 TTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTG 363981 ||| || ||||| ||||| ||||| || ||| |||| || ||| |||||||| Sbjct 6777 GAGCGAGCCCGTGACCTGTTTTATGCCCTCTGGACGCCTGATTTGTTCATGCAGCGCGTG 6836 Query 363982 GAG---GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGAT 364038 ||| | ||| | ||||| || |||||||| | || || || || | | || Sbjct 6837 GAGAACGACGGT---GACTGGTCCCTGTTTTGCCCCAATGAGTGCCCCGGCTTGGCGGAC 6893 Query 364039 GTATGGGGTGACGACT--ATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTC 364096 || || || || || | | | |||| ||||| ||| || | || ||||| | Sbjct 6894 GTGTGCGGGGAGGAGTTCAAGCAGCTC--TACGAGTCGTACGAGAAGAGCGGGAAGGCAC 6951 Query 364097 GTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAG 364156 | ||| || || || |||| ||||| ||| | |||| || ||| | ||||| | Sbjct 6952 GCAAGGTGATCAAGGCCCAACAGCTGTGGTTCGCCGTGTTGGACTCCCAGGTGGAGACGG 7011 Query 364157 GAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTG 364216 | || ||||| ||| ||| || || | ||||||| |||||| ||||||||| | || | Sbjct 7012 GCACGCCCTACATGCTGTTTAAGGACGCTTGCAACCTCAAGTCGAACCAGCAGAATCTGG 7071 Query 364217 GTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGA 364276 | || || |||||| || || ||||| || || |||||||| ||||||||| Sbjct 7072 GGGTGATCAAGTCCTCCAACCTTTGCACGGAGATCATCGAGTACACCGCCCCCGACGAGG 7131 Query 364277 CTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT-----AAAAG------- 364324 ||||| || |||||||| ||| || || |||| ||||| | || Sbjct 7132 TGGCCGTCTGCAACCTTGCCTCGGTCAACCTCTCGGCCTTTGTGCTGGAGGAGCCTTCGG 7191 Query 364325 --------ATGG----TACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTA 364372 | || ||| | |||| |||| ||| || || | ||| | | | Sbjct 7192 GCAGCGGCAAGGCCCCTACCTACGACCTGCAGCGTCTGTACGAGATCACCAAGGTGGTGA 7251 Query 364373 CTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTT 364432 | |||| || || || ||||||| || | || || | || ||| |||||| Sbjct 7252 CCCGCAACCTGAACCGCGTCATCGACATCAACTTCTACCCTGTGGAGGAGGCCAAGCGTT 7311 Query 364433 CTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGA 364492 | || ||||| || || || || || ||||||| || ||||| || || | || || | Sbjct 7312 CCAACATGCGCCACCGACCCATCGGCATTGGTGTCCAAGGCCTGGCGGATGCCTTCATCA 7371 Query 364493 TGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAA 364552 | | | | | || || || || ||||| | || || ||||| ||||| || | Sbjct 7372 AGATGCGGTTCCCCTTCGAGTCTCCGGACGCGCACCAGCTGAACAAGGACATCTTCGAGA 7431 Query 364553 CAATGTATTTTGCCGCAAT-GACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTAC 364611 | ||||| || | ||| | || || | || | ||| || || |||| ||| Sbjct 7432 CCATGTACTTCGGCGCCGTGGAAGCCTCCATGGAAATTGCCATGAA-GGAGGGCCCCTAC 7490 Query 364612 TCTACTTATGAGGGGTCCCCTCTTTCGC-AGGGAAAATTCCAGTTTGATCTATGGAATGT 364670 || | || || ||||| | | || |||| ||||| || || | ||| || Sbjct 7491 GAGACGTTTGCCGGCTCCCC-CATCAGCAAGGGCGTCTTCCAATTCGACATGTGGGGCGT 7549 Query 364671 CACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTAC 364730 ||| || || ||| ||| ||||| || || |||| || || |||| || Sbjct 7550 CACCCCCTCCACCCGCTGGGACTGGCCCGGCCTCCGCGCCAAGGTCCAGGAGCACGGCGT 7609 Query 364731 TCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAA 364790 ||||| |||||| | |||||||||||||| ||||| || || |||||||| || || Sbjct 7610 GCGCAATTCCCTCCTGCTCGCGCCCATGCCCACCGCTTCCACCGCGCAGATCCTAGGCAA 7669 Query 364791 CAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGA 364850 |||||||| |||| || ||||| ||| | || || || || || || | || || Sbjct 7670 CAACGAGTCAGTCGAGCCCTTTACCTCCAACATGTACTCCCGACGTGTGCTAGCGGGTGA 7729 Query 364851 ATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGA 364910 || | | || || |||||||| ||| || || ||| || ||||||||| | Sbjct 7730 GTTCACCATCGTCAACAAGTACCTGCTCAGCGACCTGATCGAGCGTGGGCTGTGGAACGC 7789 Query 364911 CAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACAT-TCCAGGATTTC 364969 | || ||| | ||||| | | ||| || ||||| ||| | |||| || | Sbjct 7790 CGAGGTGCGCAACCAGATCATGGGCAACCGTGGCTCCGTGCAAAACGTGGCCAGCATCCC 7849 Query 364970 CAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACT--CTCAT 365027 | | || || ||| | ||||| ||||| ||||| | ||| ||| | |||| Sbjct 7850 CCG-CGAGCTCAAGGAGCTCTACAAGACCGTGTGGGAGA--TCCGGCAGAAGTGCGTCAT 7906 Query 365028 TGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCAT 365087 || ||||||||||| ||||| || | ||||| ||| |||||| | ||| | | | Sbjct 7907 CGACATGGCGGCCGACCGCGGCGCCTACATCTGCCAGTCCCAGTCCCTCAACATCCACCT 7966 Query 365088 GACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCT 365147 | | | || || ||||| |||| || |||||||| |||||| ||||| || || Sbjct 7967 GGCCAACCCCACGCCCGCCCAGCTCACCTCCATGCACTTCTACTCCTGGAAGAAGGGGCT 8026 Query 365148 TAAGACAGG 365156 ||||| || Sbjct 8027 CAAGACCGG 8035 >seq17508 Length=3941 Score = 176 bits (194), Expect = 1e-38 Identities = 582/886 (66%), Gaps = 22/886 (2%) Strand=Plus/Plus Query 363445 GTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTT 363504 || |||||||||||| | ||| | ||||| || || | || || ||| | ||| | Sbjct 2114 GTGGAACGCCCGCAGTACATGGTGATGCGGGTGGCGTTGGGGATACATGGGAAGGACTTA 2173 Query 363505 GATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTC-GTGTATTCACGCACGCCACGCC 363563 || || || | || || ||| | | | ||| | ||| || | ||||| |||| Sbjct 2174 GAGGCGGCATTGGAGACGTATGAATTGATGAGTAATAAGTGGTTTATC-CACGCGTCGCC 2232 Query 363564 AACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAAT 363623 || ||| | |||| || || ||| || ||||||||||| || ||||| | | || Sbjct 2233 TACCTTGTTCCATGCCGGGACGCGTTTCCCCCAGATGTCTTCGTGTTTTCTGTTGACGAT 2292 Query 363624 GAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAA 363683 | || ||||| || | ||| || | ||| || | ||| | || || | ||| || Sbjct 2293 GCAGTCGGATTCGATTGTGGGGATTTATGATACGTTGAAGCAGTGCGCGGTGATTAGTAA 2352 Query 363684 GAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACA--GAACAGTTACATT 363741 | || || || |||||| | ||| | |||||| |||| || || || | || || Sbjct 2353 GGCAGCGGGTGGGATTGGTTTGTCGGTGCACAATATTCGCGCGCACGGAGCC--TATATC 2410 Query 363742 CGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 || || | ||||| | ||||| | || || ||||| |||||||||||| || Sbjct 2411 AAGGGGACGAAGGGGACGAGC-AATGGTTTAGTGCCGATGCTGCGTGTGTTTGACGTGAC 2469 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGA 363860 ||| | || || || ||||| || || ||||| ||||| ||||| || || | || Sbjct 2470 GGCGCGATATGTTGATCAGGGCGGGGGGAAGCGGCCGGGGGCCTTTGCGATTTACATTGA 2529 Query 363861 GCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA-CACGGGAA--AAGA 363917 ||| ||||| |||||||||||| | ||||| | ||||||| || ||||| |||| Sbjct 2530 GCCGTGGCATGCGGATATTTTTGAGGTGCTTGACTTGAGGAAAAATCATGGGAAGGAAGA 2589 Query 363918 GGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCG 363977 || ||| || |||||||||||||||| || ||| | |||| ||||||||| | Sbjct 2590 GG---CGCGGGCGCGTGATCTGTTCTATGGGCTGTGGATCCCTGATTTGTTTATGAAGAG 2646 Query 363978 CGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGA 364037 ||||||| | | | ||||| | | || || | |||| || || | ||| Sbjct 2647 GGTGGAGGAGGATGGGGTGTGGTCGTTGATGTGTCCCGATCAATGCCCTGGCTTGGGCGA 2706 Query 364038 -TG-TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAA-AGGC 364094 || |||| | || | | || || ||| | |||||| | ||||| || | Sbjct 2707 CTGCCATGGCAAGGCG--TTCGAGGCCCTGTACCTGCAATATGAAAAAGCGGGAAGAGTC 2764 Query 364095 TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGAC 364154 | || || | | || || | || ||||| || || |||| || ||||| ||||| Sbjct 2765 AAG-AAAACCGTGCGTGCGCAAGACCTGTGGTTCGCGATTTTGGACTCACAGATCGAGAC 2823 Query 364155 AGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCT 364214 || || || |||||| | || ||||| |||| || | ||| ||||||||| | || Sbjct 2824 GGGCACGCCGTATATGCTTTATAAAGACGCGTGTAATCTGAAGAGTAACCAGCAGAATCT 2883 Query 364215 TGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACG 364273 || || |||| |||| | ||| | ||||| |||||||| | || || || || | Sbjct 2884 AGGGACGATTC-GCAGTTCGAACTTGTGTACGGAGATTATCCAGTATACGAGCCCGGAGG 2942 Query 364274 AGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319 || || || ||||| | || ||| ||| || || |||||| Sbjct 2943 AGGTGGCTGTGTGTAATTTGGCTTCGGTCGTCCTGCCTAAGTTTGT 2988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302956308904562