Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq5368 95.1 1e-14 seq22358 93.3 4e-14 >seq5368 Length=5397 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/164 (73%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 23985 AACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 |||||| |||||| | || || || || | || || || | || ||| |||| || || Sbjct 2764 AACAAAGATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGATGTGGA 2705 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 | ||| ||||||||||||| | || ||||| ||||| ||||| || ||||| || || Sbjct 2704 GCCCAGCGACACCATCGAGAACGTGAAACAGAAGATCCAGGACAAGGAGGGCATCCCCCC 2645 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 || || ||| |||| || | | ||||||||| || || |||| Sbjct 2644 TGACCAGCAGCGACTCATCTTTGCCGGCAAGCAGCTGGAGGATG 2601 >seq22358 Length=3586 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/201 (71%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || |||||| | || || || || | || || || | || ||| |||| |||||| || Sbjct 3096 AAGATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGATGTCGAGCCC 3155 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | ||||||||||||| | || || |||||||| ||||| || ||||| || ||||| Sbjct 3156 AGCGACACCATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGAC 3215 Query 24108 CAACAGAGACTGATTTACG-GCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| | || || | || | |||||||| || || || | | | | || || || Sbjct 3216 CAGCAGCGCCTCATCTTCGCGGGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTA 3275 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| ||||| || || || Sbjct 3276 CAACATCCAAAAGGAGTCCAC 3296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429811338847605