Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq7782 179 3e-40 seq17508 143 3e-29 seq22358 134 1e-26 seq13286 134 1e-26 seq5368 91.5 1e-13 >seq7782 Length=16676 Score = 179 bits (198), Expect = 3e-40 Identities = 983/1554 (63%), Gaps = 75/1554 (5%) Strand=Plus/Minus Query 145030 CTTGATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACG 145089 || ||||| |||| | | ||||| ||||||| ||||| || || | |||||| Sbjct 7772 CTCGATCAGGTCGCTGAGCAGGTACTTGTTGACGATGGTGAACTCACCCGCTAGCACACG 7713 Query 145090 ACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGC 145149 || | |||| ||| || || ||||| || | |||||||| ||||| ||||| || || Sbjct 7712 TCGGGAGTACATGTTGGAGGTAAAGGGCTCGACTGACTCGTTGTTGCCTAGGATCTGCGC 7653 Query 145150 GGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGAT 145209 ||| | |||||||||||| ||| | || | |||||||||| |||||||| || || Sbjct 7652 GGTGGAAGCGGTGGGCATGGGCGCGAGCAGGAGGGAATTGCGCACGCCGTGCTCCTGGA- 7594 Query 145210 GTCTTCCTT-TAGCGTA--CC---CCAATCCCATAGCGAAGTCGGCCTCACGTCCCACAT 145263 |||| ||| | || ||| ||||| | | | || | ||| ||||||| Sbjct 7593 -----CCTTGGCGCGGAGGCCGGGCCAGTCCCAGCGGGTGGAGGGGGTGACGCCCCACAT 7539 Query 145264 GTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCA 145323 |||| | || || | ||||| |||| |||| ||| ||| | ||| |||| Sbjct 7538 GTCGAATTGGAAGACGCCCTTGCTGATGGGGGAGCCGGCAAACGTCTCGTAGGGGCCCTC 7479 Query 145324 AGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTG 145383 | |||| | || || |||| |||||||| || || |||||| || | Sbjct 7478 CTTCATGGCAATTTCCATGGAGGCTTCCACGGCGCCGAAGTACATGGTCTCGAAGATGTC 7419 Query 145384 CCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATC 145443 | |||| ||| | ||| || |||| | || | |||| | | || ||||| Sbjct 7418 CTTGTTCAGCTGGTGCGCGTCCGGAGACTCGAAGGGGAACCGCATCTTGATGAAGGCATC 7359 Query 145444 GGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGA 145503 || || || || | || | ||||||||| || || ||||||| | | ||| Sbjct 7358 CGCCAGGCCTTGGACACCAATGCCGATGGGTCGGTGGCGCATGTTGGAACGCTTGGCCTC 7299 Query 145504 CTCGATAGGATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGT 145563 ||| | ||| || || |||||| | |||| ||| || || ||||| || Sbjct 7298 CTCCACAGGGTAGAAGTTGATGTCGATGACGCGGTTCAGGTTGCGGGTCACCACCTTGGT 7239 Query 145564 AATGT------GCCGCAACTTTTCAAAGTCA--AACCGAGCCTC----------GTCAAC 145605 || | | ||| | || || | || ||| | || | Sbjct 7238 GATCTCGTACAGACGCTGCAGGTCGTAGGTAGGGGCCTTGCCGCTGCCCGAAGGCTCCTC 7179 Query 145606 GACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTC 145665 | |||| || || | || ||| || | || || || ||| ||| |||| | | Sbjct 7178 CAGCACAAAGGCCGAGAGGTTGACCGAGGCAAGGTTGCAGACGGCCACCTCGTCGGGGGC 7119 Query 145666 GCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTG 145725 | |||| | | |||||| | ||| | ||| | ||||| |||||||| ||||| Sbjct 7118 GGTGTACTCGATGATCTCCGTGCAAAGGTTGGAGGACTTGATCACCCCCAGATTCTGCTG 7059 Query 145726 ATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTG 145785 || || |||||| |||||||| | |||||||| || ||| ||||||||||| Sbjct 7058 GTTCGACTTGAGGTTGCAAGCGTCCTTAAACAGCATGTAGGGCGTGCCCGTCTCCACCTG 6999 Query 145786 CGTCTCCACGATAAAACGGTG-----CAAGTCCTGCGC---ACGCACCTGCTGCTGGTAG 145837 | ||| || |||| | || | || || ||||| ||| || Sbjct 6998 GGAGTCC-----AACACGGCGAACCACAGCTGTTGGGCCTTGATCACCT--TGC--GTGC 6948 Query 145838 CGGCC--CTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGG 145895 | || |||||| ||||| | |||||||| || ||| | ||| | || | Sbjct 6947 CTTCCCGCTCTTC-TCGTACGACTCGTAGAGCTGCTTGAACTCCTCCCCGCACACGTCCG 6889 Query 145896 ACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCT 145955 || |||||| |||| ||||| || | ||| ||||| | |||| | | ||||||| Sbjct 6888 CCAAGCCGGGGCACTCATTGGGGCAAAACAGGGACCAGTCACCGTCGTTCTCCACGCGCT 6829 Query 145956 CCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAG 146015 ||| |||||||| ||| ||| || || || | || ||| || ||| | || ||| Sbjct 6828 GCATGAACAAATCAGGCGTCCAGAGGGCATAAAACAGGTCACGGGCT---CGCTC--CAG 6774 Query 146016 CAC----CCATGTTTC--GCTTCAAATTAAGCACACT-ATAGATGTCCGCGTGCCACGGT 146068 | | || || ||| || || | ||| | ||| ||||||| ||||||||||| Sbjct 6773 CTCGTTGCCGTGATTCTTGC-GCAGGTCAAGGA-ACTCGAAGATGTCGGCGTGCCACGGC 6716 Query 146069 TCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTGGTCCACGTGACGTACC 146125 || | || | ||||| || || || || || || ||||||||||||| || || Sbjct 6715 TCGAGGTAAATGGCGAAGGAGCCCTTGCGCTTTCCCCCCCCCTGGTCCACGTAGCGGGCC 6656 Query 146126 ATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTT 146185 ||| ||| ||||| |||| ||||||| ||| ||| ||| ||||||| | Sbjct 6655 GTGTCGTTGAAGACACGCAGCATGGGCACGATACCGTTGGAGGTACCGTTCGAGCCGCGG 6596 Query 146186 ATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGTACTTG 146245 || || | | |||| ||| | | || | |||||||| |||||| || | ||| Sbjct 6595 ATGTAGGAGTCACGGGCGCGGATGTTGTGGATGGACACGCCGATCCCGCCGGCGAATTTG 6536 Query 146246 GATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC--GCTTCGAA 146303 || || |||||||| | ||| || ||||||||||| || ||| || |||| | Sbjct 6535 GAGATGGCGGCGCATTGCTTGAGGGTGTCGTAGATGCCATCGATGGAGTCCTCCTTC--A 6478 Query 146304 TGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCG 146363 || ||| || ||||| ||| | | ||||| || || || || ||| | || | Sbjct 6477 TGGTGAGGAGGAAGCAGGAGGATAGCTGCGGGCGGGGGGTGCCGGCGTTGAAAAGGGTGG 6418 Query 146364 GGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGTCTTGAA 146423 | | || ||||| || | ||| || ||| | ||| || ||||| ||| | | | Sbjct 6417 GAGTGGCATGCGTGAAGAGCTTTTGGGACATGAGGTTATAGGTCTCGATGGCGGCGTCGA 6358 Query 146424 TGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCA 146483 ||| || || ||||| | || |||||||||| |||||| ||||| |||||| | Sbjct 6357 CGTCCTCCTTGTGGATGCCGATGGCCACGCGCATGATCATGTGCTGGGGGCGCTCCATGA 6298 Query 146484 CTTGAT--TGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCCGAA 146535 | ||| ||| ||||| | || ||| ||||||||||| ||| | ||||| Sbjct 6297 C--GATGCCGTCCATCTTGAGCAGGTAGGACTTCTCCAGGGTCTTGAAGCCGAA 6246 >seq17508 Length=3941 Score = 143 bits (158), Expect = 3e-29 Identities = 355/528 (67%), Gaps = 17/528 (3%) Strand=Plus/Minus Query 145048 TAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGA 145107 ||| | | |||||||||| |||||| || ||| ||| |||||| |||||| || || Sbjct 3670 TAAATGCGGATTGACGACAATAAACTCCCCCGCCTTCACTCGACGCGAATACAAATTGGA 3611 Query 145108 CGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCAT 145167 || | || |||| ||||||||| |||| || || || || | || |||||||| Sbjct 3610 GGTATAAGGCTCAATGCACTCGTTATACCCCAAAATCTGCGCCGTGGAGGCCGTGGGCAT 3551 Query 145168 GTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACC 145227 | ||| | | | || || || || |||| ||| ||||| || | ||| |||| || Sbjct 3550 GGGCGCGAGGAGAAGAGAGTTCCGGAGCCCGTACTTTTTGATCTCCTTCTTCAGCGCTCC 3491 Query 145228 CCAATCCCA-TAGCGA--AGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTC 145284 ||||||||| || | | || |||| |||||| ||| | |||| ||||||| Sbjct 3490 CCAATCCCACCGGCCACTATCAGGGGTCACCCCCCACAGGTCAAATTGCAGCTTGCCCTC 3431 Query 145285 GCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAAC- 145343 || || || | ||| | | || ||| ||| || || || ||| || | Sbjct 3430 ACTTGCTGGACAGCCAGGGTATGACTCGTAGGGGCC----GTGTTCCCGCGCTAGCTCCA 3375 Query 145344 TCGCCTCCAGAGC--GC--CGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATC 145399 ||| ||| || || ||||||| || |||||| ||| | ||||||| | | Sbjct 3374 TCG-AGGCAGTGCATGCCGCGAAATACATGGTCTCGAAAATCTCTTTGTTGAGTTTCCGC 3316 Query 145400 GCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATT 145459 || | ||| ||| |||||| ||| ||| | | || | ||||| || || || | Sbjct 3315 GCGCCGGGGCTGTCGAACGGCAAGCGGAGCTGGATGAAGGTGTCGGCTAGGCCTTGCACG 3256 Query 145460 CCCACGCCGATGGGCCGATGTTTCATGTTGCTCATC-CTCGCCGACT-CGATAGGATATC 145517 |||| ||||||||| ||||| ||| ||||||| || |||| | || || || || Sbjct 3255 CCCATGCCGATGGGGCGATGCTTCTTGTTGCT--TCGCTCGGCTTCTGGGACTGGGTAGA 3198 Query 145518 GATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAA 145565 | || |||||||| || |||||||| ||||| || || ||||| |||| Sbjct 3197 GGTTGCGGTCGATGATCTTATTCAAATTTCGGACGACGACCTTGGTAA 3150 Score = 132 bits (146), Expect = 5e-26 Identities = 308/457 (67%), Gaps = 12/457 (3%) Strand=Plus/Minus Query 145626 CGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCG-TCGCTGTATTGTACGATCTCG 145684 ||| ||| ||||||||||| || ||| |||||| | | ||| | || || | ||||| Sbjct 2972 CGACCGAAGCCAAATTACACACAGCCACCTCCTCCGGGCTCG-TATACTGGATAATCTCC 2914 Query 145685 GCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCAC 145744 | ||||| || || || || || ||||| ||||| ||||| ||| || ||| Sbjct 2913 GTACACAAGTTCGAACTGCGAATCGTCCCTAGATTCTGCTGGTTACTCTTCAGATTACAC 2854 Query 145745 GCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAA--AAC 145802 ||||| || || ||||| ||||| ||| ||||| | ||| | |||| || ||| Sbjct 2853 GCGTCTTTATAAAGCATATACGGCGTGCCCGTCTCGATCTGTGAGTCCAAAATCGCGAAC 2794 Query 145803 GGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGT 145862 || ||| ||||||||||| | || | | ||| ||| ||| |||| | || Sbjct 2793 CA--CAGGTCTTGCGCACGCACGGTTTTCTTGACTCTTCCCGCTTTTTCATATTGCAGGT 2736 Query 145863 AGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACA 145922 | || |||| ||||| || | ||| ||| || ||| || || | | |||||||| Sbjct 2735 ACAGGGCCTCGAACGCCTTGCCATGGCAGTCGCCCAAGCCAGGGCATTGATCGGGACACA 2676 Query 145923 TCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCG 145982 ||| |||||| || || | | | || | || |||||||||||| || | ||||||| Sbjct 2675 TCAACGACCACACCCCATCCTCCTCCACCCTCTTCATAAACAAATCAGGGATCCACAGCC 2616 Query 145983 CGTACATCAAGTCGCGCGCTTTGCAATCCTCAGC--ACCCATG-TTTCGCTTCAAATTAA 146039 | || | || || ||||| | |||| | |||||| ||| | |||| | || Sbjct 2615 CATAGAACAGATCACGCGC---CCGCGCCTCTTCCTTCCCATGATTTTTCCTCAAGTCAA 2559 Query 146040 GCACACTATAGATGTCCGCGTGCCACGGTTCAATATA 146076 |||| | | || ||||| |||||||| ||||| || Sbjct 2558 GCACCTCAAAAATATCCGCATGCCACGGCTCAATGTA 2522 >seq22358 Length=3586 Score = 134 bits (148), Expect = 1e-26 Identities = 168/229 (73%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| |||||| || || || | ||| ||||||||||| |||||||| || Sbjct 3327 GCCGCCTCGCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCGA 3268 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCT-GCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || | Sbjct 3267 GAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCG 3208 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || || ||||| ||| || ||||| | | ||| | || ||| ||| ||||| Sbjct 3207 GGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATGGTGTCGCTGGGCTCGA 3148 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || || || || ||||| || ||||| Sbjct 3147 CATCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 3099 >seq13286 Length=1322 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||| ||| || || | ||| |||||||| || |||||||| || Sbjct 1117 CCGCCACGCAGACGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 1058 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| |||| | ||||||||||| || ||| Sbjct 1057 AGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 998 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | | ||| | || ||| ||| ||| | | Sbjct 997 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACG 938 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | |||||| || || || || || ||||| || ||||| Sbjct 937 TCGAGCGTGATGGTTTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 891 >seq5368 Length=5397 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| ||||||||||| || |||| | ||||||||||| || ||||| || || ||| Sbjct 2603 TCCTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 2662 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| ||||| || | | ||| | || ||| ||| ||| | |||| ||| | | Sbjct 2663 TCCTGGATCTTCTGTTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGATG 2722 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || || ||||| || ||||| Sbjct 2723 GTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 2757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471872429293440