Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq22358 120 2e-22 seq21338 113 4e-20 seq13286 109 4e-19 >seq22358 Length=3586 Score = 120 bits (132), Expect = 2e-22 Identities = 166/231 (72%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| ||||| |||||||||||||| ||||||||||| | Sbjct 3326 CCGCCTCGCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAG 3267 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTG-CCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | ||||||||| || ||| ||||| | || || ||||| ||||| || Sbjct 3266 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGG 3207 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | |||||| ||||| || | |||||||| | | | ||||||| |||||| Sbjct 3206 GATGCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATGGTGTCGCTGGGCTCGAC 3147 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||||||||| || || ||||| || ||||| || || ||||| || Sbjct 3146 ATCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 3096 >seq21338 Length=400 Score = 113 bits (124), Expect = 4e-20 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || || |||||||| || | || | |||||||| ||| Sbjct 185 TGGAGAGTGGACTCCTTCTGGATTTTGTAGTCCGCGACTGTGCGCGTGTCCTCCACCTGT 244 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 | ||||| ||||| ||||||||||| || || | |||||| ||| | |||| | | Sbjct 245 TCACCCGCGTAAATGAGCCGCTGTTGATCGGGCGGGATGCCCTCCTTGACTTCAATCTCC 304 Query 16853 TGCTTCACCTGGCCCACA--GTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||||||| | ||| | |||||| || || | | || || |||||||| || | Sbjct 305 TGCTTCA--AAGTCCAGATGGTGTCGGAAGGATCGATATTGACTGTAATGGTTTTGCCAG 362 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||||||||| || |||||||| Sbjct 363 TCAGCGTTTTGACGAAGATCTGCAT 387 >seq13286 Length=1322 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || |||| ||||| ||||||||||| || ||||||||||| | Sbjct 1117 CCGCCACGCAGACGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 1058 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||||| || || ||||| | || || ||||| ||||| || Sbjct 1057 AGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 998 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| || | |||||||| | | | ||||||| ||||||| Sbjct 997 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACG 938 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||||||||||| || ||||| || ||||| || || ||||| || Sbjct 937 TCGAGCGTGATGGTTTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404970543595090