Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq17508 140 4e-28 >seq17508 Length=3941 Score = 140 bits (154), Expect = 4e-28 Identities = 586/918 (64%), Gaps = 8/918 (1%) Strand=Plus/Minus Query 62750 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 62809 || || |||| |||||| || || ||||| | | || ||| || || ||||| || Sbjct 2970 ACCGAAGCCAAATTACACACAGCCACCTCCTCCGGGCTCGTATACTGGATAATCTCCGTA 2911 Query 62810 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 62869 || | || || || || |||| ||| || || |||||||| |||||||| Sbjct 2910 CACAAGTTCGAACTGCGAATCGTCCCTAGATTCTGCTGGTTACTCTTCAGATTACACGCG 2851 Query 62870 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 62929 || |||||||| || | || || || || || ||||| || || | |||||| ||| Sbjct 2850 TCTTTATAAAGCATATACGGCGTGCCCGTCTCGATCTGTGAGTCCAAAATCGCGAACCAC 2791 Query 62930 ACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTA--TACA 62987 | | || | || | | ||| ||||| | |||| ||| || | |||| Sbjct 2790 AGGTCTTGCGCACGCACGGTTTTCTTGA--CTCTTCCCGCTTTTTCATATTGCAGGTACA 2733 Query 62988 ATCGTTCGAACTCGTCTCCCCAAACATT-GTCCAGTCCAGGACATTCATCCGGACACATC 63046 |||||| | | | || || | | ||| ||||| |||| ||| ||||||||| Sbjct 2732 GGGCCTCGAACGCCT-TGCCATGGCAGTCGCCCAAGCCAGGGCATTGATCGGGACACATC 2674 Query 63047 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63106 ||||||||| | || || |||| ||| | |||||||| | |||||| ||||| || | Sbjct 2673 AACGACCACACCCCATCCTCCTCCACCCTCTTCATAAACAAATCAGGGATCCACAG-CCC 2615 Query 63107 ATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63165 ||| || ||||| | | | || || || || ||| || | | || || | Sbjct 2614 ATAGAACAGATCACGCGCCCGCGCCTCTTCCTTCCCATGATTTTTCCTCAAGTCAAGCAC 2555 Query 63166 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63225 | | | |||||| | ||||||||| || | ||| || || | | || ||||| || Sbjct 2554 CTCAAAAATATCCGCATGCCACGGCTCAATGTAAATCGCAAAGGCCCCCGGCCGCTTCCC 2495 Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 || |||||||| | |||| || || | | | || | || ||| || | | ||| Sbjct 2494 CCCGCCCTGATCAACATATCGCGCCGTCACGTCAAACACACGCAGCATCGGCACTAAACC 2435 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 |||| || || || ||||| ||||||| ||| || |||||||| | || Sbjct 2434 ATTGCTCGTCCCCTTCGTCCCCTTGATATAGGCTCCGTGCGCGCGAATATTGTGCACCGA 2375 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| || || || || ||| || | ||||| | || ||||||||||| || Sbjct 2374 CAAACCAATCCCACCCGCTGCCTTACTAATCACCGCGCACTGCTTCAACGTATCATAAAT 2315 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63465 ||| | || ||| | ||| | | |||||||| |||||| ||| | || Sbjct 2314 CCCCACAATCGAATCCGACTGCATCGTCAACAGAAAACACGAAGACATCTGGGGGAAACG 2255 Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 || || |||| || |||||||| || ||||| ||||||| || | | | | | Sbjct 2254 CGTCCCGGCATGGAACAAGGTAGGCGACGCGTGGATAAACCACTTATTACTCATCAATTC 2195 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 |||||||| | || | |||| ||| ||| || || | || || ||||| | Sbjct 2194 ATACGTCTCCAATGCCGCCTCTAAGTCCTTCCCATGTATCCCCAACGCCACCCGCATCAC 2135 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||||| ||| || | ||| || | ||| || | ||||| | || || |||| Sbjct 2134 CATGTACTGCGGGCGTTCCACCACCTTCTTCCCCAGCTTCAAGAGATAAGAACGCTCCAT 2075 Query 63646 AGTTTTAAAACCAAAATA 63663 || || || |||||||| Sbjct 2074 CGTCTTGAACCCAAAATA 2057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633443565763600