Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq566 616 2e-171 seq288 352 3e-92 seq620 197 2e-45 seq49 159 4e-34 >seq566 Length=2184 Score = 616 bits (682), Expect = 2e-171 Identities = 751/1016 (74%), Gaps = 6/1016 (1%) Strand=Plus/Plus Query 167312 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTT 167371 ||||||||| | ||||| || || || || ||| | || ||||| || | || || || Sbjct 604 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGCCTT-TTATTATT 662 Query 167372 CCCA-CTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGTTACGAGCTG 167430 |||| | || | ||| ||| ||||||| ||| | || || ||||| |||||||| || Sbjct 663 CCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 722 Query 167431 GTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCAG 167489 |||||| || || || || ||| |||||| || || ||| | || | | || | ||| | Sbjct 723 GTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGCAACTTCT-TAACTGTAGCGG 781 Query 167490 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 167549 | ||||| ||||| || |||||||||||| | || || | ||||| ||||| | | Sbjct 782 TATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGGGACCTGAAGCAC 841 Query 167550 AGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 167609 | || ||||||| | ||| || |||| ||| | ||||||||| | || | || | Sbjct 842 AAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATCGCATTACATG 901 Query 167610 GAGCCTTTGCTCTCATAGGATTTATGCTT-CGGCAATTTGAGATAAGTAGACTAGTAGGT 167668 | || |||| | | || ||| || || || || ||||| ||||| | | || |||||| Sbjct 902 GTGCATTTGGTTTAATTGGA-TTCTGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGT 960 Query 167669 ATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTT 167728 || ||||| || || || ||||| || ||||| || ||||| || || || ||||| || Sbjct 961 ATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTCGTTTCTGTATTC 1020 Query 167729 CTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCG 167788 | ||||||||||| ||||| | ||||||||||| || || ||||| |||||||| Sbjct 1021 TTAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCT 1080 Query 167789 ATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCAT 167848 || || | ||| || ||||| |||| ||||||||||||||||| || ||||| |||||| Sbjct 1081 ATTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAACCCATTCCAT 1140 Query 167849 ATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACA 167908 |||||||| || || || || |||| |||||||| | |||||||| ||||| | ||| Sbjct 1141 ATGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATTCATGGAGCTACT 1200 Query 167909 GTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACG 167968 ||||| || || || | |||||||||||| |||||||| ||| || ||| | Sbjct 1201 GTAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCA 1260 Query 167969 ACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTT 168028 || || ||| ||||||||||| ||||| || || || ||||||||||||||||||| Sbjct 1261 ACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTC 1320 Query 168029 GGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATG 168088 ||| | |||||| || || |||||| | |||||||| ||| | || ||||| || | Sbjct 1321 GGTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAACA 1380 Query 168089 GGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGAC 168148 || | |||||||||||| ||||||| | ||| | ||| | ||| | | || || ||| Sbjct 1381 GGTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACGAC 1440 Query 168149 TTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAA 168208 || || ||||| ||| || | ||||| || |||||||| |||||||||||||| || ||| Sbjct 1441 TTCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAA 1500 Query 168209 AACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGAA 168268 || ||| | | || ||||| | | | |||||||| || |||||||||||||||| Sbjct 1501 AATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGACCAACCACATGAA 1560 Query 168269 AACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGATATAATAA 168324 ||||||||||||||||| || || || ||| | || ||||| || | ||| | ||| Sbjct 1561 AACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATAGAGTAA 1616 >seq288 Length=849 Score = 352 bits (390), Expect = 3e-92 Identities = 401/538 (75%), Gaps = 0/538 (0%) Strand=Plus/Plus Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140 |||||| | || | |||||||| || | ||||| ||||| | || |||| || Sbjct 312 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 371 Query 166141 ATCTGTTTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGAG 166200 | ||| |||||| ||||||| | || |||||||| || |||||||| || |||||||| Sbjct 372 AGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTATCCGTGAA 431 Query 166201 CCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCCTCC 166260 || || || || || || | || || |||||||||||| ||||||| ||| | || Sbjct 432 CCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACTGGTGCAGTTATTCCTAGT 491 Query 166261 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATGG 166320 || ||| | || ||| |||||||||| || | |||||||| || || | || || ||| Sbjct 492 TCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGG 551 Query 166321 CTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGCC 166380 ||||| ||||||||||||| ||| || ||||| || |||||| | | || | | | Sbjct 552 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGC 611 Query 166381 TACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTA 166440 |||||||| |||||||||||| | ||||| | || |||||||||||||||| |||| Sbjct 612 TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTA 671 Query 166441 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 166500 || | ||| || || || || |||||||| ||||| ||| | || || || |||| ||| Sbjct 672 GCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATCGGACAA 731 Query 166501 GGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTC 166560 ||| |||||||| | ||||| | ||||| ||| || ||||||| |||| | || Sbjct 732 GGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTA 791 Query 166561 TTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTG 166618 ||||||||||| |||||||| || |||||||| ||||||||| ||||| || |||| Sbjct 792 TTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 849 >seq620 Length=282 Score = 197 bits (218), Expect = 2e-45 Identities = 162/197 (82%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 166705 AACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGT 166764 ||||| |||||||| || || ||||||||||| || ||||||||||| ||||| || ||| Sbjct 86 AACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGT 145 Query 166765 TACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTC 166824 ||||| || || | |||||||||||||| |||||||||||||| | | |||||| Sbjct 146 TACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCTCGTGCTTTACACTTC 205 Query 166825 TTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATG 166884 ||| | || || ||||| ||||| ||||||||||| ||||||||||||||||| || ||| Sbjct 206 TTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTACTATG 265 Query 166885 GCATTCAACCTCAACGG 166901 ||||||||| | || || Sbjct 266 GCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 159 bits (176), Expect = 4e-34 Identities = 160/205 (78%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 166872 TGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGG 166931 |||||| || |||||||||||| | || ||||||||||||||||| || | | ||| | Sbjct 2147 TGTTAGTACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAG 2088 Query 166932 TCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGA 166991 || || || ||| ||||||||||||| || | |||||||||||| | | |||||||| Sbjct 2087 CCAAGGCCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGA 2028 Query 166992 AGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGCTGCTGA-GTCCA 167050 |||||||||||| ||||| || |||||||||||||| ||| | || | || | || | Sbjct 2027 AGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGCCGTATCTAATGTTC- 1969 Query 167051 CTCCTGTGGCACTCACCGCACCTGC 167075 |||||| ||| | | ||| ||||| Sbjct 1968 TTCCTGTTGCATTAAACGCTCCTGC 1944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567063312293600