Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq22358 120 3e-22 seq13286 114 1e-20 seq7782 107 2e-18 seq5368 96.9 3e-15 >seq22358 Length=3586 Score = 120 bits (132), Expect = 3e-22 Identities = 166/231 (72%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||| || || || || | || || || || |||| || || || || || Sbjct 3096 AAGATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGATGTCGAGCCC 3155 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| ||| | || || | || ||||| || || ||||||||||| || || ||||| Sbjct 3156 AGCGACACCATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGAC 3215 Query 22336 CAACAACGTCTTATATTTGC-CGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || || || || || || ||||| ||| | ||||| |||||| |||| || || Sbjct 3216 CAGCAGCGCCTCATCTTCGCGGGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTA 3275 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||| ||||| || |||||| | || || || |||| |||| || || Sbjct 3276 CAACATCCAAAAGGAGTCCACCCTGCACTTGGTCCTGCGTCTGCGAGGCGG 3326 >seq13286 Length=1322 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||| || || || || | || || ||||| |||| || || ||||| || Sbjct 888 AAGATGCAAATCTTCGTCAAGACCCTGACGGGCAAAACCATCACGCTCGACGTGGAGCCC 947 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| || | || | | || ||||| || || ||||||||||| || || ||||| Sbjct 948 AGCGACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGAC 1007 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || || || || || ||| | ||||| ||||| | || || ||| Sbjct 1008 CAGCAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGACGGGCGCACGCTTTCGGACTAC 1067 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || |||||| | || || || ||||| |||| || ||| Sbjct 1068 AACATCCAGAAGGAGTCCACCCTGCACTTGGTGTTGCGTCTGCGTGGCGGT 1118 >seq7782 Length=16676 Score = 107 bits (118), Expect = 2e-18 Identities = 204/297 (69%), Gaps = 5/297 (2%) Strand=Plus/Minus Query 130101 CAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCC 130160 ||| |||||||| ||| | ||||||||||||||||| || | ||||| || | | ||| Sbjct 6752 CAGGTCAAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGAGCC 6693 Query 130161 CTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACAT 130217 ||| || || ||||| ||||| |||| ||| | | | |||| |||| |||| ||| Sbjct 6692 CTTGCGCTTTCCCCCCCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACACGCAGCAT 6633 Query 130218 TGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAAC 130277 | | | | ||||||| || ||||| | || ||| | | |||| || || | Sbjct 6632 GGGCACGATACCGTTGGAGGTACCGTTCGAGCCGCGGATGTAGGAGTCACGGGCGCGGAT 6573 Query 130278 GTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGT-A 130336 ||| || | | | || || |||||| | ||||| || || |||| || || | | Sbjct 6572 GTTGTGGATGGACACGCCGATCCCGCCGGCGAATTTGGAGATGGCGGCGC-ATTGCTTGA 6514 Query 130337 GCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGAGG 130393 | || || || |||||| |||| ||| || || ||| | |||||||| || |||| Sbjct 6513 GGGTGTCGTAGATGCCATCGATGGAGTCCTCCTTCATGGTGAGGAGGAAGCAGGAGG 6457 >seq5368 Length=5397 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 |||||||||||| || || || || | || || || || |||| || || ||||| | Sbjct 2761 AAAGATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGATGTGGAGCC 2702 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || ||| ||| | || | | ||||| || || || ||||||||||| || || || || Sbjct 2701 CAGCGACACCATCGAGAACGTGAAACAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 2642 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCAC 22382 || || || || || ||||||||||| ||| | |||||| ||| || Sbjct 2641 CCAGCAGCGACTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGTAC 2594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419606298685915