Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq11801 91.5 3e-13 >seq11801 Length=2927 Score = 91.5 bits (100), Expect = 3e-13 Identities = 267/408 (65%), Gaps = 10/408 (2%) Strand=Plus/Plus Query 218582 TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACC 218641 || ||||||| | ||||| ||||||| ||| | | ||||| || ||||| | Sbjct 2167 TGATGGATGGGTTGAAGCCGGCGCAGCGGAAGGTGTTGTTTGCGTGTTTTAAGCGAA--- 2223 Query 218642 TGGTTCAAGAA----ATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 | || ||||| ||||||||||| ||| || |||| ||||| || || ||| | Sbjct 2224 -GTTTGAAGAAGGAGATTAAGGTCGCGCAGCTTGCTGGGTATGTGTCTGAGCATTCGGCG 2282 Query 218698 TACCATCACGGTGA-GCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 || || ||||| || || || || | || ||||||| || ||||| ||| | | ||| Sbjct 2283 TATCACCACGGGGAGGCCTCGT-TGAACGGGACCATTGTCGGGATGGCTCAGAATTTTGT 2341 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGG 218816 ||| |||||||| ||| ||| |||| | || |||||||| | | | |||| Sbjct 2342 CGGCTCGAACAACATTGGCTTTCTGTTCCCGAGTGGGCAGTTTGGCACGAGGATTATGGG 2401 Query 218817 TGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCA 218876 || ||||| || | | ||| ||||||| |||| | |||||||| Sbjct 2402 GGGGAAGGACGCCGCAAGCCCTCGATATGTCTTTACGCGGTTGGAGGAGGTGACGCGTGC 2461 Query 218877 GGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGAT 218936 | ||||| | | || |||||| |||| | || | || || ||||| ||| Sbjct 2462 GTTGTTCCACCCGGAGGATGATTTGCTTTTGCCTTACCAGGATGAGGATGGGCAGGTGAT 2521 Query 218937 TGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGG 218984 ||||| |||| |||| |||| |||||| | |||| || ||||| Sbjct 2522 CGAGCCTGAGTACTATGCTCCTGTTATTCCTACTGTGCTTGTCAATGG 2569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027523492538231