Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq13286 179 7e-40 seq22358 172 1e-37 seq5368 122 2e-22 seq7782 109 1e-18 seq10165 102 2e-16 seq17171 96.9 6e-15 seq6368 96.9 6e-15 seq11801 87.8 3e-12 seq11064 84.2 4e-11 >seq13286 Length=1322 Score = 179 bits (198), Expect = 7e-40 Identities = 178/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||||||| || |||||||| || |||||||| || || || Sbjct 1117 CCGCCACGCAGACGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 1058 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||| || || | ||||||||| ||||| ||||| | || |||||||| || Sbjct 1057 AGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 998 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTAC 68413 ||||| |||||||| || |||||| ||| ||| |||||| ||||| |||| || || Sbjct 997 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTC-GCTGGGCTCCAC 939 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||| ||||| |||||||||||||| || ||||| Sbjct 938 GTCGAGCGTGATGGTTTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 891 >seq22358 Length=3586 Score = 172 bits (190), Expect = 1e-37 Identities = 178/229 (78%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| || |||||||| ||||||||||| || || ||| Sbjct 3326 CCGCCTCGCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAG 3267 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTT-CCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | || || || | |||||| ||| ||||| ||||| | || |||||||| || Sbjct 3266 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGG 3207 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTA 68412 ||||| |||||||| || |||||| ||| || |||||||||||| |||| || | Sbjct 3206 GATGCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATGGTGTC-GCTGGGCTCGA 3148 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | ||||||||| || ||||| |||||||||||||| || ||||| Sbjct 3147 CATCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 3099 >seq5368 Length=5397 Score = 122 bits (134), Expect = 2e-22 Identities = 124/159 (78%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | |||||| ||||| || ||||||| || ||||| || || ||||| ||| Sbjct 2600 CCATCCTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCC 2659 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 ||||| || ||||| || ||| |||||||||||| ||| | || || || | ||| Sbjct 2660 TTGTCCTGGATCTTCTGTTTCACGTTCTCGATGGTGTC-GCTGGGCTCCACATCGAGGGT 2718 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || ||||| |||||||||||||| || ||||| Sbjct 2719 GATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 2757 >seq7782 Length=16676 Score = 109 bits (120), Expect = 1e-18 Identities = 209/305 (69%), Gaps = 10/305 (3%) Strand=Plus/Minus Query 30942 CCGCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGACAGCTCCCATGCGGTCTTGTAG 31001 |||||||| || || | ||| |||||| |||| | |||||| ||||||||||| Sbjct 7927 CCGCGGTCGGCCGCCATGTCGATGACGCACTTCTGCCGGATCTCCCACACGGTCTTGTAG 7868 Query 31002 ATTGCCTTGAGCTCAGGGTGGATGCCAATGACACG--TTGGATGGACCCCCCGTTGGCAA 31059 | |||||||||| || |||||| | |||| ||| | ||| || | |||| | | Sbjct 7867 AGCTCCTTGAGCTCGCGGGGGATGC--TGGCCACGTTTTGCACGGAGCCACGGTTGCCCA 7810 Query 31060 TAATCTGGTTCTTCATGGCCTCGG---ACCACGTGCCACGAGCGATGAGGTCGCGCACGA 31116 | |||||||| || |||||| |||| ||||| |||| ||||||| | | Sbjct 7809 TGATCTGGTTGCGCA---CCTCGGCGTTCCACAGCCCACGCTCGATCAGGTCGCTGAGCA 7753 Query 31117 GGTAGTTGTTGACCACAGGGAACTCTCCAGCAAGGGTCCGGCGGCTGTACAGATTAGAAG 31176 |||| |||||||| | | |||||| || || || || ||| ||||| || || | Sbjct 7752 GGTACTTGTTGACGATGGTGAACTCACCCGCTAGCACACGTCGGGAGTACATGTTGGAGG 7693 Query 31177 TGATCGGCTCCATAGCCTCTACGGACCCGCAGATTTGCGCGGTGGATGCGGTGGGCATCA 31236 | | ||||| | | ||| | || ||| ||||||||||| ||||||||||| Sbjct 7692 TAAAGGGCTCGACTGACTCGTTGTTGCCTAGGATCTGCGCGGTGGAAGCGGTGGGCATGG 7633 Query 31237 GCGCG 31241 ||||| Sbjct 7632 GCGCG 7628 Score = 93.3 bits (102), Expect = 8e-14 Identities = 431/674 (64%), Gaps = 24/674 (4%) Strand=Plus/Minus Query 31959 CCGGGACACTCCTTGGGGTCGAAGAGCGACCATGCGACATCGGCCTCTACTCGCTTCATG 32018 ||||| ||||| |||||| || || ||||| | | ||| ||| || |||| |||| Sbjct 6883 CCGGGGCACTCATTGGGGCAAAACAGGGACCAGTCACCGTCGTTCTCCACGCGCTGCATG 6824 Query 32019 AACAGGTCGTTCAGCCACATCGCGTAAAACAGATTCCTGGCGCGTTGGGTCTCCTCACCC 32078 |||| || | ||| | || |||||||| | | ||| || | ||| | || Sbjct 6823 AACAAATCAGGCGTCCAGAGGGCATAAAACAGGTCACGGGCTCGCTCCAGCTCGTTGCCG 6764 Query 32079 TGGTTACGTCGGAGCAGCAGGAAGTCCATGATGTCGGGGTGGTGGGGCTCGAGGTACACG 32138 || || || || ||||| || | |||||||| ||| ||||||||||| | | Sbjct 6763 TGATTCTTGCGCAGGTCAAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATG 6704 Query 32139 GCGAAAGATCCCTTGCG---GCGACCCCCCTGGTTTGCGTATGCAGATGTCGTGTCGT-- 32193 ||||| || |||||||| | |||||||||| |||| || | | |||||||| Sbjct 6703 GCGAAGGAGCCCTTGCGCTTTCCCCCCCCCTGGTCCACGTA-GCGG--GCCGTGTCGTTG 6647 Query 32194 -ACACCTTCAGCATGGGTACGATGCCATCAGACTCGCCATTGGTCCCCTGGATCTTGGAA 32252 | || ||||||||| ||||| || | || || || | || |||| | ||| Sbjct 6646 AAGACACGCAGCATGGGCACGATACCGTTGGAGGTACCGTTCGAGCCGCGGATGTAGGAG 6587 Query 32253 CCACGGCCGCGAATGTCGCTCAGGTGCAGGCCGATGCCGCCACCAAACTTGGAAA--GCT 32310 ||||| |||| |||| | | | || |||||| ||||| | || ||||| | || Sbjct 6586 TCACGGGCGCGGATGTTGTGGATGGACACGCCGATCCCGCCGGCGAATTTGGAGATGGCG 6527 Query 32311 GTGCAACGTCACCAAGAGACTTGAAGATGTTGGTGAGCGAGTCATC---CACGTGGACAA 32367 | ||| | || | | | ||||| || ||||| || || | || | Sbjct 6526 GCGCA--TTGCTTGAGGGTGTCGTAGATGCCATCGATGGAGTCCTCCTTCATGGTGAGGA 6469 Query 32368 GGAAACAGCTTGCAAGATTGGCATTTCTGAACCCTGCATTGAACAGGGTCGGGCTCGCAT 32427 |||| ||| | || | | | || || ||||| ||||| || | |||| Sbjct 6468 GGAAGCAGGAGGATAGCTGCGGGCGGGGGGTGCCGGCGTTGAAAAGGGTGGGAGTGGCAT 6409 Query 32428 GCGTGAACTTGCGCTT---GGA-AAGAGCATCGTAGGTTTCCTTCACCTTCGCGATGTCT 32483 ||||||| | |||| ||| | ||| | ||||| || | | ||| ||| Sbjct 6408 GCGTGAA---GAGCTTTTGGGACATGAG-GTTATAGGTCTCGATGGCGGCGTCGACGTCC 6353 Query 32484 TCTCCCCAGAGAGCGATCGCCACGCGCAAATACGTGTGCTGGGGGCGCTCTACGACCTTG 32543 || || |||| |||||||||| | |||||||||||||||| | ||| || Sbjct 6352 TCCTTGTGGATGCCGATGGCCACGCGCATGATCATGTGCTGGGGGCGCTCCATGACGATG 6293 Query 32544 CCATCCACCTTGGTCAGGTAGAGGCGCTTCATGGTTGAGAAGCCAAAGTAGTCAAAGTCA 32603 || |||| |||| ||||||| || || ||| |||||| |||||||| |||| Sbjct 6292 CCGTCCATCTTGAGCAGGTAGGACTTCTCCAGGGTCTTGAAGCCGAAGTAGTCGTAGTCG 6233 Query 32604 TAGTCGCGGTCGTA 32617 |||| |||||||| Sbjct 6232 AAGTCCCGGTCGTA 6219 >seq10165 Length=1505 Score = 102 bits (112), Expect = 2e-16 Identities = 99/125 (79%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 68338 TTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGG 68397 |||| ||||| || || |||||||||||||| || ||||| ||| ||| |||||| | Sbjct 2 TTTGCTGGTCAGGGGGTATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCG 61 Query 68398 TGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATC 68456 |||| ||| | || || |||| |||||||| || ||||| || ||||||||||| ||| Sbjct 62 TGTC-GCTCGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATC 120 Query 68457 TGCAT 68461 ||||| Sbjct 121 TGCAT 125 >seq17171 Length=4834 Score = 96.9 bits (106), Expect = 6e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 |||||||| || | ||| || |||||||| | |||||||| || || | ||| || | | Sbjct 2840 AGGCGCAAGACTAGGTGGAGGGTGGACTCCCTCTGGATGTTGTACTCCGCGAGCGTGCGC 2899 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 | | | || ||| || || ||||| ||||| | ||||| ||| || ||||| | Sbjct 2900 AAAGCCTTTAGCTGTTTACCAGCGAAGATGAGCCGTTGTTCACCGGCCGGGATGCCCGTC 2959 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || | || ||| || || | | |||||| || | | || | || | |||| Sbjct 2960 CACTCCTTAACCTTCTGTTTCACAGTCCAGATGGTCTCGGAAGGATCCATATCAATGGTG 3019 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| ||||| || ||||||||||| |||||||| Sbjct 3020 ATGGTTTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 3057 >seq6368 Length=220 Score = 96.9 bits (106), Expect = 6e-15 Identities = 96/122 (79%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 268362 CGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGA 268421 |||| || || || ||||| || || || |||||| | ||| |||||||||||||| Sbjct 68 CGCGGGTAATCTTACGGGTGACAAAGGTGGGGCCACGACGGGGGGACTCGTGGTTGAAGA 127 Query 268422 GGATGCCGTTGCACG-CGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTAT 268480 ||||||||||| ||| ||||||| |||| |||||||||||||| || | ||||||| Sbjct 128 GGATGCCGTTG-ACGAGGAACATGTCATAGGCCTCACGGTAGTTGACCAGGATCCAGTAG 186 Query 268481 GC 268482 || Sbjct 187 GC 188 >seq11801 Length=2927 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 178032 AACTTCTTCGAAAAGATGTTGGTGAGCTTTGAACCGTATCCATTCCTGCCTGCGCCAGTC 178091 || ||| |||| || || || | ||||| | ||||| |||||||| ||| | ||| Sbjct 589 AATTTCGTCGAGAAAATATTAGCAAGCTTGGCTCCGTACCCATTCCTCCCTCCCGTGGTC 530 Query 178092 CTCTCCTGGGCATCATCAAAGTTCTCGCCCGTGAGGAGGTGGCCGAAGATGAGCTCGGGC 178151 ||| | | |||||||||| || ||| |||||||||| |||||||||||||||||| Sbjct 529 TTCTTCATGCCATCATCAAAATTGGAGCCGGTGAGGAGGTTGCCGAAGATGAGCTCGGGG 470 Query 178152 ACATAG 178157 || ||| Sbjct 469 ACGTAG 464 >seq11064 Length=922 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 224975 GCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGG 225034 ||| |||||||| |||||||||| ||| ||| || || ||| ||||| | ||| | Sbjct 152 GCAAACCGCCACATGATGTACTGGGCGGGCGTCTCGTTCAAGTGCTTCTCCAAGTGGAAG 93 Query 225035 AAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTT 225078 ||||| ||||| || ||||| |||| ||||||||||| ||||| Sbjct 92 AAAGCGTGCTGCGCCACGTAGGCCAGACGCATGTTGGGGTGCTT 49 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921348321018520