Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq7782 518 6e-142 seq13862 111 3e-19 seq18521 93.3 8e-14 >seq7782 Length=16676 Score = 518 bits (574), Expect = 6e-142 Identities = 1254/1865 (67%), Gaps = 75/1865 (4%) Strand=Plus/Minus Query 243776 AGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGC 243835 ||||||||||||||||||||||| || | ||||| || || |||||||| || ||| Sbjct 8047 AGGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGAGTAGAAGTGCATGGAGGTGAGC 7988 Query 243836 TTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGG 243895 | | || | |||| | || || || ||||||||||||| |||| Sbjct 7987 TGGGC------GGGCGTGGGGTTGGCC------AGGTGGATGTTGAGGGACTGGGACTGG 7940 Query 243896 TCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATA 243954 || | ||| |||| || || || |||||| ||||| | |||||| ||||| | Sbjct 7939 CAGATGTAGG-CGCCGCGGTCGGCCGCCATGTCGATGACGCACTTCTGCCGGATCTCCCA 7881 Query 243955 CGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTT-CGATGTTCTGCACCGAGC 244013 | | |||||||||| |||||| | | ||||| | || | | ||| ||||| |||| Sbjct 7880 CACGGTCTTGTAGAGCTCCTTGAGCT-CGCGGGGGATGCTGGCCACGTTTTGCACGGAGC 7822 Query 244014 CCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCG 244073 | || | | |||| |||| |||||| | |||||||||| |||| ||||| | | Sbjct 7821 CACGGTTGCCCATGATCTGGTTGCGCACCTCGGCGTTCCACAG-CCCA--CGCTCGATCA 7765 Query 244074 CCTCG---ACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGT 244130 ||| | ||||| | |||| || | ||||| |||| ||||| || || || Sbjct 7764 GGTCGCTGAGCAGGTACTTGTTGACGATGGTGAACTCACCCGCTAGCACACGTCGGGAGT 7705 Query 244131 AGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCG 244190 | | |||| | | | ||||||| ||| ||||||| || |||||||| ||| | Sbjct 7704 ACATGTTGGAGGTAAAGGGCTCGACTGACTCGTTGTTGCCTAGGATCTGCGCGGTGGAAG 7645 Query 244191 CAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC 244250 | || |||||||||| | ||| || || | |||||||||| ||||| | | Sbjct 7644 CGGTGGGCATGGGCGCGAGCAGGAGGGAATTGCGCACGCCGTGCTCCTGGACCTTGGCGC 7585 Query 244251 TGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAA 244310 ||| || ||||||||| | ||| || ||| |||||||||||| | Sbjct 7584 GGAGGCCGGGCCAGTCCCAGCGGGTGGAGGGGG---------TGACGCCCCACATGTCGA 7534 Query 244311 ACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCT 244370 | || | | |||||||||| |||| ||| | | ||| |||||| || || | Sbjct 7533 ATTGGAAGACGCCCTTGCTGATGGGGGAGCCGGCAAACGTCTCGTAGGGGCCCTCCTTCA 7474 Query 244371 GGGCCAGCTTACA-GCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTG 244429 ||| | || || | | || | |||| || |||| |||||||||||||| |||| Sbjct 7473 TGGCAAT-TTCCATGGAGGCTTCCACGGCGCCGAAGTACATGGTCTCGAAGATGTCCTTG 7415 Query 244430 TTCATGTCGCGGGCCTTGCCGCAGGT--GAAGGGGATGCCCATCATCATGAAGACGTCGG 244487 |||| | | | || | ||| || |||||||| | |||| | |||||| | || | Sbjct 7414 TTCAGCTGGTGCGCGT--CCGGAGACTCGAAGGGGAACCGCATCTTGATGAAGGCATCCG 7357 Query 244488 CCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGG 244547 |||| || || || || ||||||||||||| ||| ||| ||||||| ||| |||| || Sbjct 7356 CCAGGCCTTGGACACCAATGCCGATGGGTCGGTGGCGCATGTTGGAACGCTTGGCCTCCT 7297 Query 244548 GCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGA 244607 ||| ||||| |||||| |||||| || ||| ||||||||||| | || | || Sbjct 7296 CCACAGGGTAGAAGTTGATGTCGATGACGCGGTTCAGGTTGCGGGTCACCACCTTGGTGA 7237 Query 244608 CGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGT-----GATCCT 244662 ||| ||| |||| | |||||| |||||| ||| | || || | |||| Sbjct 7236 TCTCGTACAGACGCTGCAGGTCGTAG--GTAGGGG-CCTTGCCGCTGCCCGAAGGCTCCT 7180 Query 244663 C----ACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGT 244718 | ||||| | |||| ||| ||| |||||||||||||||||||| || | | Sbjct 7179 CCAGCACAAAGGCCGAGAGGTTGACCGAGGCAAGGTTGCAGACGGCCACCTCGTCGGGGG 7120 Query 244719 TGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGT 244778 |||||||| || ||||| ||||| ||||| | ||||||| ||||| | ||| | Sbjct 7119 CGGTGTACTCGATGATCTCCGTGCAAAGGTTGGAGGACTTGATCACCCCCAGATTCTGCT 7060 Query 244779 GATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCT 244838 | || |||||| |||||| |||||||| | |||||| ||||| || ||||| | || Sbjct 7059 GGTTCGACTTGAGGTTGCAAGCGTCCTTAAACAGCATGTAGGGCGTGCCCGTCTCCACCT 7000 Query 244839 GGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCC-C 244897 ||| | | | ||| | ||| || | ||||||| | | |||| ||||| || | Sbjct 6999 GGGAGTCCAACACGGCGAACCACAGCTGTTGGGCCTTGATCACCTTGCGTGCCTTCCCGC 6940 Query 244898 TCTGCCTCGTAGCGGGT-GTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCC 244956 ||| | ||||| || | ||| || || |||||| || || || || | | ||| Sbjct 6939 TCTTC-TCGTA-CGACTCGTAGAGCTGCTTGAACTCCTCCCCGCACACGTCCGCCAAGCC 6882 Query 244957 GGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAA 245016 ||||||| ||||| | || ||| || ||| ||| || || | ||||||||| Sbjct 6881 GGGGCACTCATTGGGGCAAAACAGGGACCAGTCACCGTCGTTCTCCACGCGCTGCATGAA 6822 Query 245017 GAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCT---GCTCGTCCGAGCC 245073 | || || |||||||||| | || ||||| | || | || |||||| ||| Sbjct 6821 CAAATCAGGCGTCCAGAGGGCATAAAACAGGTCACGGGCTCGCTCCAGCTCGTT---GCC 6765 Query 245074 AGTG-TTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGA 245132 ||| ||||| | ||| || | || || |||| |||| ||||||| ||||| | ||| | Sbjct 6764 -GTGATTCTTGCGCAGGTCAAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAA 6706 Query 245133 CAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACC-ATCCTCTCGAGCGCGTTG 245191 |||| || ||| ||||| || ||||||||||| | | || | ||||| Sbjct 6705 TGGCGAAGGAGCCCTTGCGCTTTCCCCCCCCCTGGTCCACGTAGCGGGCCGTGT-CGTTG 6647 Query 245192 AAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCG 245251 |||| ||||| | ||||| || ||||| ||| ||||| | ||| |||||||| | Sbjct 6646 AAGACACGCAGCATGGGCACGATACCGTTGGAGGTACCGTTCGAGCCGCGGATGTAGGAG 6587 Query 245252 CCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGG 245311 | | | | || |||| |||||||| ||| | ||||||||| ||||||||| | Sbjct 6586 TCACGGGCGCGGATGTTGTGGATGGACACGCCGATCCCGCCGGCGAATTTGGAGATGGCG 6527 Query 245312 GCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGA 245371 ||||| ||||| |||||| ||||| || ||| |||| ||||||| |||| || Sbjct 6526 GCGCATTGCTTGAGGGTGTCGTAGATGCCATCGATGGAGTCCTCCTTCATGGTGAGGAGG 6467 Query 245372 AAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGG 245431 ||||||||||| ||||| || |||| ||| | |||||| || ||||| |||| || Sbjct 6466 AAGCAGGAGGATAGCTGCGGGCGGGGGGTGCCGGCGTTGAAAAGGGTGGGAGTGGCATGC 6407 Query 245432 GTAAAGTAGCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCC 245490 || ||| ||| | || | || || |||| || ||||||| || || Sbjct 6406 GTGAAG-AGCTTTTGGGACATGAGGTTATAGGTCTCGATGGCGGCGTCGACGTCCTCCTT 6348 Query 245491 GTGGATCTGCAGGGCGCAC-CTCATGAGGGTGTGCTGGGGCGTCTCGATG--GGTCCCTC 245547 |||||| | ||| ||| | ||||| |||||||||| ||| ||| | | || Sbjct 6347 GTGGATGCCGATGGC-CACGCGCATGATCATGTGCTGGGGGCGCTCCATGACGATGCC-- 6291 Query 245548 GGGTCC--CTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCA 245605 |||| |||||||| |||||| ||| || |||||||| || ||||| |||| | Sbjct 6290 --GTCCATCTTGAGCAGGTAGGACTTCTCCAGGGTCTTGAAGCCGAAGTAGTCGTAGTCG 6233 Query 245606 AAGTC 245610 ||||| Sbjct 6232 AAGTC 6228 >seq13862 Length=727 Score = 111 bits (122), Expect = 3e-19 Identities = 203/293 (69%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 ||||| ||||||||||||||||| ||||| || || |||||| | ||| ||||| ||| Sbjct 617 GAGGCCCGCTGCTTCTACGGCTTTCAGATCGCTATCGAGAACATCCACAGCGAGGTCTAC 558 Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA--ACGGGCTGTTCAAGG 42618 || || || |||| |||||| | | | | | || | | || ||| |||| | Sbjct 557 TCCCTCCTCATCGACACCTACATCAAGAA--CGGGCAAGAGAAGCACAAGCTCCTCAATG 500 Query 42619 CCATGGAGACGATGCCCTGCATCAAGAAG-AAGGCGGACTGGGCGCTCAACTGGATCGAG 42677 | || || ||| | ||||| || || | |||||| | ||||| ||| ||| || Sbjct 499 CTATCGACACGGTCCCCTGTGTCC-GACGCAAGGCGCAGTGGGCCCTCCGGTGGTGTGAC 441 Query 42678 AGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTC 42737 || | || | |||| ||| ||||| | |||||| | ||||||||||| |||||| Sbjct 440 AGGAAGTATGCCTCCTTCGCTGAGCGGCTGATTGCCTTTGCGGCCGTCGAGGGGATCTTC 381 Query 42738 TTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCC 42790 ||| ||| | || ||| || |||||| | ||| ||| || || |||||| Sbjct 380 TTCAGTGGCTCGTTTTGCTCTATTTTCTGGTTGAAGAAGAGGGGGTTGATGCC 328 Score = 87.8 bits (96), Expect = 3e-12 Identities = 135/192 (70%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 42792 GGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCC 42851 || ||| ||||||| ||||| || ||| | | || || || ||||| | ||||||||| Sbjct 211 GGCCTCTCCTTCTCCAACGAGCTTATCTCCCGCGATGAAGGCCTGCACTGCGACTTTGCC 152 Query 42852 TGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATC 42911 ||| | || | | ||| | | |||| | || ||||||| || ||||||| Sbjct 151 TGCTTGCTCTAC---AGCAAGTGTGCGATCAAGTGCCCGGAGGAGCGAGTGGTGGCCATC 95 Query 42912 ATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTG 42971 |||| ||| || |||| |||||||||||||||| |||| | | |||||||| || Sbjct 94 ATCAAGGACGCGGTGGCGATCGAGAAGGAGTTCATCACCGATGCCTTGCCCGTGGAGTTG 35 Query 42972 GTCGGCATGAAC 42983 | || |||||| Sbjct 34 ATTGGGATGAAC 23 >seq18521 Length=3205 Score = 93.3 bits (102), Expect = 8e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||| | || || |||| |||||| || |||||| | |||||| Sbjct 244 ATCTGGGACATGTACAAGCAAGCCGAGGCCTCCTTCTGGACGGCAGAGGAGCTGGACCTG 185 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAAC 42419 ||| | |||| | | | ||||||| || ||||| || || ||| || || Sbjct 184 GCCCACGACAAGACGGACTGGGAGAAGCTCTCTGACAAAGAGCGTCATTTTGTCTCGCAC 125 Query 42420 ATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCC 42470 | || || ||||| |||||||| || || || |||||||||||| ||||| Sbjct 124 GTCCTTGCTTTCTTTGCCGCCTCGGATGGGATCGTCAATGAGAACTTGGCC 74 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944058365326160