Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq19097 127 2e-24 >seq19097 Length=7688 Score = 127 bits (140), Expect = 2e-24 Identities = 319/481 (66%), Gaps = 14/481 (3%) Strand=Plus/Minus Query 20282 GCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAA 20341 ||||| ||||| || || ||||| ||||| || | | || |||| ||| ||||| Sbjct 3002 GCAATATTAAACGGCACGCCCAAGCCCATATCCGCACTGCGTTGGTACATCTGGCAGGAC 2943 Query 20342 AGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAAC 20401 | ||| || | || || || || ||||| |||| |||||| ||||| | |||||| | Sbjct 2942 AACTCCCCATTGGCCACGTAGAACTGACAAAACATGTGACAAGGCGGCAAGGCCATCTTC 2883 Query 20402 GACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTT 20461 ||| || |||||||||||||| | | ||| || | || ||| | ||| || || || Sbjct 2882 CCCAAATCGGCCGGGTTCCACGCCGAGACAATAATCCGTCGATCCTCCGGGTTCTTCTTA 2823 Query 20462 AT----TAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATC 20517 || | |||| | | | || || || | |||| || ||||| ||||| | Sbjct 2822 ATCGTCTCAATCGCCGCT----GCCAGCTGATCGATGCCCTTCCCCGTATAATCAGCGTG 2767 Query 20518 CGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATC 20577 | ||| || ||||||| || |||| |||||| || || || || || ||||| || Sbjct 2766 CATATCCTTATATTCCGCCCCGAAATGCCGCCACTGAAACCCATACACTGGCCCCAAGTC 2707 Query 20578 CCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTC 20637 ||||||| | || |||| || | ||||| ||||||| ||| ||| Sbjct 2706 CCCCTCCTCCCGATGACCCAGTCCAATCTTATCCAGGTACTCCCTACTAGAATTCCCGTC 2647 Query 20638 CCATATCTTGA--CTCCTGTTCTTGAA-AGCTCCCTGGAGTCAGTACTCCCCTTCAGAAA 20694 ||| ||| | || | | ||| || || | | |||| || | ||| || ||| Sbjct 2646 CCAAATCCCAATCTTCTTATCCTTCAACAGAT---TCGAGTTCGTCTTGCCCGACACAAA 2590 Query 20695 CCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAA 20754 ||||||||| || | | | || || | ||||||||||| ||| || || | ||| || || Sbjct 2589 CCAAAGCAGTTCCTCCGCGACCCCCCTCCAAAACACCCTCTTAGTCGTCAATAAAGGGAA 2530 Query 20755 G 20755 | Sbjct 2529 G 2529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441241541246440