Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq13286 93.3 3e-14 >seq13286 Length=1322 Score = 93.3 bits (102), Expect = 3e-14 Identities = 167/239 (70%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 33894 ATCGAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTA 33953 || || ||| || | ||| |||| ||||| || || ||| ||||||||| |||||||| Sbjct 1124 ATAGACACCGCCACGCAGACGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTA 1065 Query 33954 ATCTGCCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGAT 34012 || | || || ||| |||| |||| ||||| || || || || ||||||||||| | Sbjct 1064 GTCCGA-AAGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGT 1006 Query 34013 CCACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTA 34071 | ||| | || ||| |||||| || |||||||| | | ||| | | || | Sbjct 1005 CGGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCA-CGTTCTCGATCGTGTCGCTG 947 Query 34072 GATTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 | || |||| ||| || ||||| || || || || || || ||||||||||| || Sbjct 946 GGCTCCACGTCGAGCGTGATGGTTTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396947270640382