Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq13286 118 3e-21 seq22358 116 9e-21 seq5368 105 2e-17 seq10165 95.1 3e-14 >seq13286 Length=1322 Score = 118 bits (130), Expect = 3e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | |||||||| ||||| || | || || || |||||| Sbjct 1081 TCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCGAAG 1022 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTT 288401 || || ||||| || ||||| || || || |||||||| ||| |||| |||||| Sbjct 1021 ATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTT-CACGTT 963 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||||| | || || ||||||||||| || || || ||||| |||||||| Sbjct 962 CTCGATCGTGTCGCTGGGCTCCACGTCGAGCGTGATGGTTTTGCCCGTCAGGGTCTTGAC 903 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 902 GAAGATTTGCAT 891 >seq22358 Length=3586 Score = 116 bits (128), Expect = 9e-21 Identities = 144/193 (75%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT-GCGAA 288341 || |||||||| || ||||| | ||||||||| ||||| || | || || || ||||| Sbjct 3290 TCCTTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCCGCGAA 3231 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGT 288400 ||| || ||||| || ||||| || || || |||||||| ||| |||| ||| | Sbjct 3230 GATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTT-CACAT 3172 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 | || || | ||||| | || || ||||| ||||| ||||| || ||||| ||||||| Sbjct 3171 TCTCGATGGTGTCGCTGGGCTCGACATCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGA 3112 Query 288461 CGAATATCTGCAT 288473 |||| || ||||| Sbjct 3111 CGAAGATTTGCAT 3099 >seq5368 Length=5397 Score = 105 bits (116), Expect = 2e-17 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 |||||| || || || || | || || || || ||||| || ||||| || | || Sbjct 2590 GAGCGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGG 2649 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || |||||||| ||| ||||||||| || || | ||||| | || || Sbjct 2650 GATGCCCTCCTTGTCCTGGATCTTCTGTTTCACGTTCTCGATGGTGTCGCTGGGCTCCAC 2709 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || ||||| ||||||||||| || ||||| Sbjct 2710 ATCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 2757 >seq10165 Length=1505 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| || |||||||| ||| |||||||| || || | ||||||| || Sbjct 16 GGTATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTCGGCTCC 75 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 76 ACGTCCAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179294815165298