Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq7782 152 6e-32 seq2632 134 2e-26 seq5822 105 8e-18 seq17508 104 3e-17 seq13862 102 1e-16 >seq7782 Length=16676 Score = 152 bits (168), Expect = 6e-32 Identities = 581/900 (65%), Gaps = 19/900 (2%) Strand=Plus/Minus Query 114512 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 114571 |||||||| || || ||||| || | || || ||| || |||| |||| || Sbjct 7117 GTGTACTCGATGATCTCCGTGCAAAGGTTGGAGGACTTGATCACCCCCAGATTCTGCTGG 7058 Query 114572 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 114631 || ||||| ||| || || ||||| | |||||||| ||||| ||||||||| ||| Sbjct 7057 TTCGACTTGAGGTTGCAAGCGTCCTTAAACAGCATGTAGGGCGTGCCCGTCTCCACCTGG 6998 Query 114632 GACTTGAGAATAGCCTTCCAGACATCGGCGGC-TGGCACAG-TGGCGTTGGCTCGCCCCT 114689 || | | | || ||| | | ||| | | || | |||| | || || || Sbjct 6997 GAGTCCAACACGGCGAACCACAGCTGTTGGGCCTTGATCACCTTGCGT-GCCTTCCCGCT 6939 Query 114690 CCTCCTCGTACTTTGTGTAGAGG-GCTTCAAACTCTTCACC---CACGGCCTCTGAGAGC 114745 | || |||||| |||||| |||| || ||| || || |||| || | || Sbjct 6938 CTTC-TCGTACGACTCGTAGAGCTGCTTGAA-CTCCTCCCCGCACACGTCCGCCAAG--- 6884 Query 114746 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATG 114805 || || || || ||||| || || ||||| | ||| | | ||| || |||| |||| Sbjct 6883 CCGGGGCACTCATTGGGGCAAAACAGGGACCAGTCACCGTCGTTCTCCACGCGCTGCATG 6824 Query 114806 AAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCC 114863 || | || || ||||||| || | || || || || || ||| | || | | Sbjct 6823 AACAAATCAGGCGTCCAGAGGGCATAAAACAGGTCACGG--GCTCGCTCCAGCTCGTTGC 6766 Query 114864 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 114923 | ||||| |||| || | || || | ||| || ||||||||||| || ||||| | Sbjct 6765 CGTGATTCTTGCGCAGGTCAAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAA 6706 Query 114924 CCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAA 114980 |||| || ||||| || | || |||||| || || | || ||| | || | Sbjct 6705 TGGCGAAGGAGCCCTTGCGCTTTCCCCCCCCCTGGTCCACGTAGCGGGCCGTGTCGTTGA 6646 Query 114981 ATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACT 115040 | || || ||||| || | |||||| | || || || | || || || || | Sbjct 6645 AGACACGCAGCATGGGCACGATACCGTTGGAGGTACCGTTCGAGCCGCGGATGTAGGAGT 6586 Query 115041 TATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCG 115100 | ||| | || | |||||| || || || || || || | || ||||| | Sbjct 6585 CACGGGCGCGGATGTTGTGGATGGACACGCCGATCCCGCCGGCGAATTTGGAGATGGCGG 6526 Query 115101 CGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGA 115160 |||| | | |||| || ||||||| || ||||| ||||| |||| | | || |||| Sbjct 6525 CGCATTGCTTGAGGGTGTCGTAGATGCCATCGATGGAGTCCTCCTTCATGGTGAGGAGGA 6466 Query 115161 AGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGA 115220 ||||| || | || || | || || || |||||||| ||||| || || || || Sbjct 6465 AGCAGGAGGATAGCTGCGGGCGGGGGGTGCCGGCGTTGAAAAGGGTGGGAGTGGCATGCG 6406 Query 115221 TGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGT 115280 |||| | ||||||||| | |||||||| | | ||||| | ||| ||| || Sbjct 6405 TGAAGAGCTTTTGGGACATGAGGTTATAGGTCTCGATGGCGGCGTCGACGTCCTCCTTGT 6346 Query 115281 GAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGA 115340 | || ||||| | || ||||| | ||||| ||||| ||||| | ||| || || | Sbjct 6345 GGATGCCGATGGCCACGCGCATGATCATGTGCTGGGGGCGCTCCATGACGATGCCGTCCA 6286 Query 115341 GCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAACCAAAGTCATAGTCCC 115400 | | | ||||| |||||||| |||||||| || || || | |||| |||||| Sbjct 6285 TCTTGAGCAGGTAGGACTTCTCCAGGGTCTTGAAGCCGAAGTAGTCGTAGTCGAAGTCCC 6226 Score = 91.5 bits (100), Expect = 2e-13 Identities = 300/462 (65%), Gaps = 16/462 (3%) Strand=Plus/Minus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 |||||||||||| ||||||| | || ||||||||||| || |||||||||| Sbjct 8082 TGAACTGAATGGCATCGGCCTTGGGGCGGGTGCGAAGGTAGTACATGCCGGTCTTGAGCC 8023 Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 113684 ||| |||||||| || | ||||| |||| | || || | | || || | ||| | Sbjct 8022 CCTTCTTCCAGGAGTAGAAGTGCATGGAGGTGAGCTGGGCGGGCGTGGGGTTGGCCAGGT 7963 Query 113685 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCA 113744 || ||| | ||||| || |||| || || || || |||||||| || || | Sbjct 7962 GGATGTTGAGGGACTGGGACTGGCAGATGTAGGCGCCGCGGTCGGCCGCCATGTCGATGA 7903 Query 113745 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGA--- 113801 | |||| | ||| |||||||| || ||||||| | ||| | || |||| Sbjct 7902 CGCACTTCTGCCGGATCTCCCACACGGTCTTGTAGAGCTCCTTGAGCTCGCGGGGGATGC 7843 Query 113802 TATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTT---CATATC-- 113856 | ||||| ||||| | |||||||| ||| |||||| | || || || Sbjct 7842 TGGCCACG---TTTTGCACGGAGCCAC---GGTTGCCCATGATCTGGTTGCGCACCTCGG 7789 Query 113857 CTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAA 113916 | || ||| || ||| || | || || | || | ||| ||||| | || Sbjct 7788 CGTT--CCACAGCCCACGCTCGATCAGGTCGCTGAGCAGGTACTTGTTGACGATGGTGAA 7731 Query 113917 CTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATT 113976 ||||||||| || |||| || || |||| || | ||||| | |||| || Sbjct 7730 CTCACCCGCTAGCACACGTCGGGAGTACATGTTGGAGGTAAAGGGCTCGACTGACTCGTT 7671 Query 113977 GTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGC 114018 ||| || | ||| || |||||||| || ||||||||||| || Sbjct 7670 GTTGCCTAGGATCTGCGCGGTGGAAGCGGTGGGCATGGGCGC 7629 >seq2632 Length=5999 Score = 134 bits (148), Expect = 2e-26 Identities = 293/435 (67%), Gaps = 18/435 (4%) Strand=Plus/Plus Query 10765 GGGTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAG 10824 ||| ||| |||||||| ||||| || || || || ||||||||||| | || || Sbjct 4359 GGGCAGGTCCACGGTGACGCGGCGATCGAAACGGCCGGGACGGAGGAGGGCCTGATCCAG 4418 Query 10825 GATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATC 10884 || ||| |||||| || || |||||||| | |||||| | | | || ||||| || Sbjct 4419 GACGTCAGCGCGGTTGGTGGCGGCGATGACGATGATGCCGGGGTTGCCCTCGAAGCCGTC 4478 Query 10885 CATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGGGCATACCA 10942 ||| || |||| || ||||| | ||| || || || || || || ||| || | | Sbjct 4479 CATTTCCGTCAGCAGCTGATTCAAGGTCTGCTCACGCTCGTCGTTTCCGCCCGCGAA--A 4536 Query 10943 CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGG-TTG 11001 ||||||| || || ||| || ||||| || ||||||||||||| ||| || || | Sbjct 4537 CCCGCACCACGCTGGCGACCCACCGCGTCGATCTCATCGATGAAAATGATGCAAGGCGCG 4596 Query 11002 ATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACAT 11061 | ||| || | | || || || || || || | | ||||| |||||||||||||| Sbjct 4597 TTCTTCTTGGCCTGC-TCGAACATGTCACGCACACGCGACGCACCCACACCCACAAACAT 4655 Query 11062 TTCCACAAAAT------TGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGC 11115 ||||| || | ||| |||||| ||||| || || || ||||| || Sbjct 4656 CTCCACGAACTCGGACCCGGCCGCGGAA------ATGAAAGGCACACCAGACTCACCTGC 4709 Query 11116 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACG 11175 | ||| ||| || || ||||| || || || || ||| | || | |||| || Sbjct 4710 CACGGCCTTGGCCAGCAGCGTCTTACCGGTACCGGGGGGCCCGTCCAGGATCACACCGCG 4769 Query 11176 TGGGATCCTGGCACC 11190 || ||| ||||||| Sbjct 4770 AGGAATCTTGGCACC 4784 >seq5822 Length=3490 Score = 105 bits (116), Expect = 8e-18 Identities = 191/277 (69%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 29122 TATGGGGAGGAAGAAATTAAAGCCGTTGAGGCTTGCCTTCGAGATGGCTGGCTCGCTGGC 29181 || || |||| || ||||| ||||| || ||||| || ||||||||||| || ||| Sbjct 638 TACGGTGAGGCCGAGATTAAGGCCGTGGACCAATGCCTGCGTGATGGCTGGCTGGCAGGC 579 Query 29182 TTTGGTG-ATCGCACTATGGAGTTTGAGAAGAGGGTGGCCGACACATTCGGAAAGAGACA 29240 || || | | ||||| || ||||| |||||| ||||||||| || ||||| |||| Sbjct 578 TTCGGGGAAGCGCACGATTGAGTTCGAGAAGCGGGTGGCCGCCATGTTCGGCAAGAAGTT 519 Query 29241 CGGACTCTTTGTAAACTCCGGGAGTAGTGCGATCCTTTTAGGGCTCTGTGCCCTCAACCT 29300 ||| || ||||| || | ||| ||| || | ||||| ||| |||| Sbjct 518 CGGCCTGTTTGTCAATTGGGGGTCCTCTGCCTACCCGATGGGGCTGGCAAGCCTAGACCT 459 Query 29301 CCCAAAGGGCTCTGAGGTTGTGACACCCGCGTGCGGTTTCTCGACAACGGTGGCACCCCT 29360 || ||||| |||| ||||| | ||| ||| ||||| || ||||||| ||| | Sbjct 458 GCCCAAGGGGAGCAAGGTGGTGACGCACGCCTGCACCTTCTC-ACTGCGGTGGCGCCCAT 400 Query 29361 CGTACAATTGGGTCTCAAACCAGTGTTCTGTGATGTG 29397 | | || ||||| || || || || ||||| || ||| Sbjct 399 CATCCAGTTGGGCCTGAAGCCGGTCTTCTGCGACGTG 363 >seq17508 Length=3941 Score = 104 bits (114), Expect = 3e-17 Identities = 311/475 (65%), Gaps = 4/475 (1%) Strand=Plus/Minus Query 114455 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 114514 ||| ||||||| ||| ||| || |||| ||||||||||| ||| ||| || Sbjct 2988 ACAAACTTAGGCAGGACGACCGAAGCCAAATTACACACAGCCACCTCCTCCGGGCTCGTA 2929 Query 114515 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 114574 |||| ||||| ||||||||||| || ||||| ||| || || | |||| || || Sbjct 2928 TACTGGATAATCTCCGTACACAAGTTCGAACTGCGAATCGTCCCTAGATTCTGCTGGTTA 2869 Query 114575 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 114634 ||| |||||||| || || |||||||| || ||||| |||||||| | || || Sbjct 2868 CTCTTCAGATTACACGCGTCTTTATAAAGCATATACGGCGTGCCCGTCTCGATCTGTGAG 2809 Query 114635 TTGAGAATAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCC 114694 | | ||| || ||| | || || |||| || ||| ||| ||| | | Sbjct 2808 TCCAAAATCGCGAACCACAGGTCTTGCGCACGCACGGTTTTCTTGACTCTTCCCGCTTTT 2749 Query 114695 TCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGC-CTCTGAGAGCCCTGGTGC 114753 || || | ||| ||||| || ||| | | ||| ||| || | || || || Sbjct 2748 TCATATTGCAGGTACAGGGCCTCGAACGCCT-TGCCATGGCAGTCGCCCAAGCCAGG-GC 2691 Query 114754 CTT-ATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGT 114812 || ||| || || | | ||||| ||| ||||||| || | |||||| || | | Sbjct 2690 ATTGATCGGGACACATCAACGACCACACCCCATCCTCCTCCACCCTCTTCATAAACAAAT 2631 Query 114813 CTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 114872 | |||||||| || | |||| ||||| || || || ||||| | ||| ||||| Sbjct 2630 CAGGGATCCACAGCCCATAGAACAGATCACGCGCCCGCGCCTCTTCCTTCCCATGATTTT 2571 Query 114873 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 114927 | ||| || | | || | |||||||| |||||||| || | ||| | ||| Sbjct 2570 TCCTCAAGTCAAGCACCTCAAAAATATCCGCATGCCACGGCTCAATGTAAATCGC 2516 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 113882 AGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA 113941 ||||| | || | |||| |||||| |||| |||||| ||||| || | | | Sbjct 3681 AGATCTTGCAATAAATGCGGATTGACGACAATAAACTCCCCCGCCTTCACTCGACGCGAA 3622 Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 || | ||||| || || ||||||| |||||| || | ||||| || || || |||||| Sbjct 3621 TACAAATTGGAGGTATAAGGCTCAATGCACTCGTTATACCCCAAAATCTGCGCCGTGGAG 3562 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC 114042 || ||||||||||| || | |||||| ||| ||||| || Sbjct 3561 GCCGTGGGCATGGGCGCGAGGAGAAGAGAGTTCCGGAGCCC 3521 >seq13862 Length=727 Score = 102 bits (112), Expect = 1e-16 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| | |||| |||||||||||||||||| | ||||| || || ||||||||| Sbjct 328 GGCATCAACCCCCTCTTCTTCAACCAGAAAATAGAGCAAAACGAGCCACTGAAGAAGATC 387 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAAC 126226 ||||| || ||| || |||| || |||||||| |||||| |||| ||||| || Sbjct 388 CCCTCGACGGCCGCAAAGGCAATCAGCCGCTCAGCGAAGGAGGCATACTTCCTGTCACAC 447 Query 126227 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAG 126286 ||| | |||||||||||||| || ||| ||||| || | ||| || | | | Sbjct 448 CACCGGAGGGCCCACTGCGCCTTGCGTCGGACACAGGGGACCGTGTCGATAGCATTGAGG 507 Query 126287 AGTTCCTTCTTTTC-TGATGGATCTTTGATGTACTTATCTATGAG 126330 || | | ||| || || | || |||||||| | || ||||| Sbjct 508 AGCTTGTGCTTCTCTTGCCCGTTC-TTGATGTAGGTGTCGATGAG 551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597175954506280