Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq13286 188 8e-43 seq22358 158 1e-33 seq5368 127 2e-24 seq10165 89.7 6e-13 seq17171 82.4 8e-11 >seq13286 Length=1322 Score = 188 bits (208), Expect = 8e-43 Identities = 176/224 (79%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| |||| ||| |||||| || || ||||| || | || || ||| | Sbjct 1106 ACGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGCCC 1047 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| ||||| ||||||||||||| || | || |||||| Sbjct 1046 GTCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTT 987 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| ||||| || | || | | ||||||||| | ||||| |||| |||||| Sbjct 986 GTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCGAGCGTGAT 927 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCACGC 42216 |||||||||||| || ||||| || ||||||||||| ||| ||| Sbjct 926 GGTTTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTTCGCGC 883 >seq22358 Length=3586 Score = 158 bits (174), Expect = 1e-33 Identities = 175/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | ||||| ||||| |||| ||| ||||||||| || ||||| || | Sbjct 3326 CCGCCTCGCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAG 3267 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCA-GCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || |||||||| || ||||| ||||| ||||||||||||| || Sbjct 3266 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGG 3207 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||||||| ||| ||||| || | || | | |||||||| | || || Sbjct 3206 GATGCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATGGTGTCGCTGGGCTCGAC 3147 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 ||||| |||||||| |||||||| || ||||| || ||||||||||| ||| Sbjct 3146 ATCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTTC 3095 >seq5368 Length=5397 Score = 127 bits (140), Expect = 2e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || || || ||||||||||||||||| | || | || ||||||| Sbjct 2603 TCCTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 2662 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || ||||| | || | | |||||||| | |||||||||| |||||| Sbjct 2663 TCCTGGATCTTCTGTTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGATG 2722 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || |||||||| || ||||| || ||||||||||| || Sbjct 2723 GTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 2760 >seq10165 Length=1505 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 42087 TGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTG 42146 |||||||| | || | || ||||||||| ||| || || || | || | | |||| Sbjct 4 TGCTGGTCAGGGGGTATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTG 63 Query 42147 TCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGC 42206 ||||||| ||||| || | ||||||||| |||||||| |||||||| || ||||| ||| Sbjct 64 TCGCTCGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGC 123 Query 42207 AT 42208 || Sbjct 124 AT 125 >seq17171 Length=4834 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| || | || | ||| |||| | || || ||||| || || || || ||| Sbjct 2843 CGCAAGACTAGGTGGAGGGTGGACTCCCTCTGGATGTTGTACTCCGCGAGCGTGCGCAAA 2902 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 | | |||||| ||||||||||| ||||| || || | |||| || | || | | Sbjct 2903 GCCTTTAGCTGTTTACCAGCGAAGATGAGCCGTTGTTCACCGGCCGGGATGCCCGTCCAC 2962 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| | | || ||||| | ||| | || ||| | |||| ||| | |||||| Sbjct 2963 TCCTTAACCTTCTGTTTCACAGTCCAGATGGTCTCGGAAGGATCCATATCAATGGTGATG 3022 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||||| |||||||| || ||||| ||||| Sbjct 3023 GTTTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 3057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543051255303440