Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq22358 120 3e-22 seq13286 114 1e-20 seq5368 96.9 3e-15 >seq22358 Length=3586 Score = 120 bits (132), Expect = 3e-22 Identities = 148/201 (74%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||| |||||||| || | || ||||| |||| || ||||||||||| Sbjct 3296 GTGGACTCCTTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCC 3237 Query 64307 -GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 || | ||||| |||||||||||||| || || || || || || || || |||||||| Sbjct 3236 CGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTT 3177 Query 64366 TACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | || || | || || || || | || | ||||||||| |||| || Sbjct 3176 CACATTCTCGATGGTGTCGCTGGGCTCGACATCGAGGGTGATGGTCTTGCCCGTCAGGGT 3117 Query 64426 TTTTACGAAAATTTGCATTTT 64446 || ||||| |||||||| || Sbjct 3116 CTTGACGAAGATTTGCATCTT 3096 >seq13286 Length=1322 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| | | ||| | || | || || || || || |||||||| || | Sbjct 1118 ACCGCCACGCAGACGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 1059 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| || |||||||| || || | ||||| |||||||||||||| || Sbjct 1058 AAGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGG 999 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || |||||||| || ||| | || || | || ||||| Sbjct 998 GATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCAC 939 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||| ||||| |||| || || ||||| |||||||| || Sbjct 938 GTCGAGCGTGATGGTTTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 888 >seq5368 Length=5397 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 || || ||||||||||||||| | ||||| ||||||||||| || || || || || || Sbjct 2603 TCCTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 2662 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || || || || || || ||| | || || | || ||||| || | || | | Sbjct 2663 TCCTGGATCTTCTGTTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGATG 2722 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||||| |||| || || ||||| |||||||| || Sbjct 2723 GTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 2760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499496211882040