Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq7782 609 2e-169 seq13621 111 2e-19 >seq7782 Length=16676 Score = 609 bits (674), Expect = 2e-169 Identities = 1265/1865 (68%), Gaps = 46/1865 (2%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||||| ||||| | |||||| || ||||||||||| ||||| ||||||||||| |||| Sbjct 6237 TACGACTACTTCGGCTTCAAGACCCTGGAGAAGTCCTACCTGCTCAAGATGGACGGCATC 6296 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||| || || || || | |||||||| |||||||| || ||| | ||| Sbjct 6297 GTCATGGAGCGCCCCCAGCACATGATCATGCGCGTGGCCATCGGCATCCACAAGGAGGAC 6356 Query 93838 AT-GCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATAC-CATGGCCA 93895 | | || | | | || | | |||| | ||| | || |||| ||| Sbjct 6357 GTCGACGCCGCCATCGAGACCTATAACCT-CATGTCCCAAAAGCTCTTCACGCATG-CCA 6414 Query 93896 CCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGA 93955 | || ||||| |||||||| || ||||| || ||| | || || || ||||| | | Sbjct 6415 CTCCCACCCTTTTCAACGCCGGCACCCCCCGCCCGCAGCTATCCTCCTGCTTCCTCCTCA 6474 Query 93956 CGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCT 94015 | | |||| ||||||||| || || | ||||| ||||||| | || || |||||| Sbjct 6475 CCATGAAGGAGGACTCCATCGATGGCATCTACGACACCCTCAAGCAATGCGCCGCCATCT 6534 Query 94016 CAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACA 94075 | |||| ||| || || ||||| | ||||| || | || ||| | | ||||||| Sbjct 6535 CCAAATTCGCCGGCGGGATCGGCGTGTCCATCCACAACATCCGCGCCCGTGACTCCTACA 6594 Query 94076 TCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACG 94135 ||||||| | || || ||||||||||| |||| || ||||| || ||||||||| || Sbjct 6595 TCCGCGGCTCGAACGGTACCTCCAACGGTATCGTGCCCATGCTGCGTGTCTTCAACGACA 6654 Query 94136 CGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCG 94195 |||| ||||||||||||||||| || || | | | ||||| || ||||| | || |||| Sbjct 6655 CGGCCCGCTACGTGGACCAGGGGGGGGGAAAGCGCAAGGGCTCCTTCGCCATTTACCTCG 6714 Query 94196 AGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATC 94255 |||| |||||||| ||| | | ||| | |||||||| ||||| ||||||||||| | Sbjct 6715 AGCCGTGGCACGCCGACATCTTCGAGTTCCTTGACCTGCGCAAGAATCACGGCAACGAGC 6774 Query 94256 TGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCG 94315 ||||| | ||| | ||||| || || || |||||| ||| || | || ||| | |||| Sbjct 6775 TGGAGCGAGCCCGTGACCTGTTTTATGCCCTCTGGACGCCTGATTTGTTCATGCAGCGCG 6834 Query 94316 TCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACG 94375 | ||||| || | |||| || ||||| |||||||| || ||||| || | |||| Sbjct 6835 TGGAGAACGACGGTGACTGGTCCCTGTTTTGCCCCAATGAGTGCCCCGGCTTGGCGGACG 6894 Query 94376 TTTGTGGATCGCGTTTTGAAG-ACTTGTATG-CTCGTTACGAATCGCAGGGCAAGGCCAG 94433 | || || | | || ||| | | || | ||| ||||| | || ||||| | Sbjct 6895 TGTGCGGGGAG-GAGTTCAAGCAGCTCTACGAGTCG-TACGAGAAGAGCGGGAAGGCACG 6952 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 ||||| || | || |||||||| | ||||| |||||||||||||| Sbjct 6953 CAAGGTGATCAAGGCCCAACAGCTGTGGTTCGCCGTGTTGGACTCCCAGGTGGAGACGGG 7012 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 ||||||||||| |||| |||||| || |||| |||||| ||||||||| | || || Sbjct 7013 CACGCCCTACATGCTGTTTAAGGACGCTTGCAACCTCAAGTCGAACCAGCAGAATCTGGG 7072 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 |||||||||| ||| || || ||||| ||||| ||||||| || | || |||||| | Sbjct 7073 GGTGATCAAGTCCTCCAACCTTTGCACGGAGATCATCGAGTACACCGCCCCCGACGAGGT 7132 Query 94614 TGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGC--GAGATGCCTAC--- 94668 || || || ||||| | ||| ||||||| || | || |||| ||| |||| | Sbjct 7133 GGCCGTCTGCAACCTTGCCTCGGTCAACCTCTCGGCCTTTGTGCTGGAGGAGCCTTCGGG 7192 Query 94669 --ACGTCTA--CTGCTTCGTTCGATCTGGAGGAGCTTGTGAAC---TTCGCGGGAAGGAT 94721 || | | | || | | ||| || | ||| | || || || | |||| | Sbjct 7193 CAGCGGCAAGGCCCCTACCTACGACCT---GCAGCGTCTGTACGAGATCAC--CAAGG-T 7246 Query 94722 GGT---CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGA 94778 ||| | ||||||||| | || ||||||| ||||||||||| || |||||| | Sbjct 7247 GGTGACCCGCAACCTGAACCGCGTCATCGACATCAACTTCTACCCTGTGGAGGAGGCCAA 7306 Query 94779 GAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCT 94838 | || ||| || || || ||||||||||| || ||||| || | ||||| || | Sbjct 7307 GCGTTCCAACATGCGCCACCGACCCATCGGCATTGGTGTCCAAGGCCTGGCGGATGCCTT 7366 Query 94839 GGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATT 94898 | | |||||| | |||| ||| ||| |||||| |||| | |||| || Sbjct 7367 CATCAAGATGCGGTTCCCCTTCGAGTCTCCGGACGCGCACCAGCTGAACAAGGACATCTT 7426 Query 94899 CGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGG 94958 ||| | ||| || | ||| ||| || || ||| | | | |||| || || || Sbjct 7427 CGAGACCATGTACTTCGGCGCCGTGGAAGCCTCCATGGAAATTGCCA----TGAAGGAGG 7482 Query 94959 GCCAC-ACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCT 95017 ||| | |||| |||| ||| || ||| | ||||| | || || |||||| | | Sbjct 7483 GCCCCTACGAGACGTTTGCCGGCTCCCCCATCAGCAAGGGCGTCTTCCAATTCGACATGT 7542 Query 95018 GGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAAC 95077 |||| || | ||||| | | |||||| | || ||||| | || | | Sbjct 7543 GGGGCGTCACCCCCTCCACCCGCTGGGACTGGCCCGGCCTCCGCGCCAAGGTCCAGGAGC 7602 Query 95078 ACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCC 95137 |||| ||| || | || || | || ||||||||||| || ||||| |||||||||| Sbjct 7603 ACGGCGTGCGCAATTCCCTCCTGCTCGCGCCCATGCCCACCGCTTCCACCGCGCAGATCC 7662 Query 95138 TTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCG 95197 | |||||||||||||| |||| ||||| ||||||||| ||||| | | || ||||| | Sbjct 7663 TAGGCAACAACGAGTCAGTCGAGCCCTTTACCTCCAACATGTACTCCCGACGTGTGCTAG 7722 Query 95198 CCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGA-CGTCTCTGGGTGTG 95256 | || || ||| || || |||||||| |||| || | ||||||| || |||| || Sbjct 7723 CGGGTGAGTTCACCATCGTCAACAAGTACCTGCTCAGCGACCTGATCGAGCGTGGG-CTG 7781 Query 95257 TGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT--CC 95314 ||| | | |||| ||||| | | || | |||||||| || ||| | || Sbjct 7782 TGGAACGCCGAGGTGCGCAACCAGATCATGGGCAACCGTGGCTCCGTGCAAAACGTGGCC 7841 Query 95315 CGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGC---AGC 95371 || || || || |||||| |||||||||||||||||||||||||| || || Sbjct 7842 AGC--ATCCCCCGCGAGCTCAAGGAGCTCTACAAGACCGTGTGGGAGATCCGGCAGAAGT 7899 Query 95372 GCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNN 95431 |||| | ||||| ||||||| |||||| ||| |||||||||| Sbjct 7900 GCGTCA---TCGACATGGCGGCCGACCGCGGCGCCTACATCTGCCAGTCCCAGTCCCTCA 7956 Query 95432 NNNNNNNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGA 95491 ||||| | |||| | || | | || |||||| |||||| |||| Sbjct 7957 ACATCCACCTGGCCAACCCCACGCCCGCCCAGCTCACCTCCATGCACTTCTACTCCTGGA 8016 Query 95492 GAAAGGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATAC 95551 ||||| ||||||||||| ||||| || | || ||| | || ||||| || |||| | Sbjct 8017 AGAAGGGGCTCAAGACCGGCATGTACTACCTTCGCACCCGCCCCAAGGCCGATGCCATTC 8076 Query 95552 AGTTC 95556 ||||| Sbjct 8077 AGTTC 8081 >seq13621 Length=8118 Score = 111 bits (122), Expect = 2e-19 Identities = 227/334 (68%), Gaps = 10/334 (3%) Strand=Plus/Plus Query 53016 AAGGCCGCGTACTGGGTGAACGCCATCGGGTACGCTCTCATCTCGGAGATTCAGATCGAG 53075 |||| || |||||||| ||||||||||| ||||| ||||| ||| | | ||| Sbjct 5345 AAGGGGGCCTACTGGGTCAACGCCATCGGCTACGCCCTCATTGAAGAGGTGTCCCTGGAG 5404 Query 53076 ATCGGG--GGAACCGAGGTAGACACGCTCTACCCCGAGTGGATGTTCTTCTGGGAAAGTA 53133 || || | || || | |||||||||||| |||| | | || ||||||| Sbjct 5405 ATTGGATCGCAA--GATATCGACACGCTCTACTCCGATTACCTCTTTCTCTGGGAGGAAC 5462 Query 53134 TGACCCAGAGACCCGGGGCGCGGCTCGGCGAGCAGATCGGGAAGTTCGCGTACTCCGCCG 53193 | ||||| | ||||| || || || ||| ||||| ||| || || | || Sbjct 5463 TCACCCAACGCCCCGGTGCCCGCATCATGGAGGCCATCGGTAAGCATACGCCATCGGACG 5522 Query 53194 ACGTGGAAGAGGACATGATCGAGTT---CGCCCAGCAGGCCCGTACGCTGTACGTCCCGC 53250 |||||||| ||||||| ||||| |||| |||| || || | ||| | Sbjct 5523 ACGTGGAAAGCTACATGATTGAGTTTTCCGCCAAGCAA---CGAGAACTTTTCGTACAAA 5579 Query 53251 TCCCGTTCTGGTTCAACAAGTACTTCATGGAGACCGGGCTCAGCATCCCCCTCATCGCCC 53310 |||| |||| |||||||| |||||| |||||| || ||| ||||||||||| ||| Sbjct 5580 TCCCCTTCTTCTTCAACAAATACTTCTTGGAGAAGGGCCTCGCTCTCCCCCTCATCTCCC 5639 Query 53311 TGACCTACCACGAGATCAAGGTCAAGGTAACGTT 53344 | || |||||||| |||||| ||||| | || || Sbjct 5640 TCACGTACCACGAAATCAAGATCAAGATCACCTT 5673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494576075504360