Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7782 223 3e-53 seq13286 113 4e-20 seq22358 98.7 1e-15 >seq7782 Length=16676 Score = 223 bits (246), Expect = 3e-53 Identities = 994/1557 (64%), Gaps = 53/1557 (3%) Strand=Plus/Minus Query 153006 ATGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTC 153065 || ||||| || || ||||| |||||| | ||||| ||||| | ||| |||| Sbjct 7768 ATCAGGTCGCTGAGCAGGTACTTGTTGACGATGGTGAACTCACCCGCTAGCACACGTCGG 7709 Query 153066 AAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTG 153125 | || | ||| || || || || | || ||||| |||||||| || || || ||| Sbjct 7708 GAGTACATGTTGGAGGTAAAGGGCTCGACTGACTCGTTGTTGCCTAGGATCTGCGCGGTG 7649 Query 153126 GTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCG 153185 | ||||| |||||| ||| | || | ||||| |||| ||||||| | | | | | Sbjct 7648 GAAGCGGTGGGCATGGGCGCGAGCAGGAGGGAATTGCGCACGCCGTGCTCCTGGACCTTG 7589 Query 153186 TCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGT 153245 | | | |||| ||||| | | || || || || |||||||||| | || Sbjct 7588 GCGCGGAGGCCGGGCCAGTCCCAGCGGGTGGAGGGGGTGACGCCCCACATGTCGAATTGG 7529 Query 153246 AACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCC 153305 || || || ||| ||| |||||||||||| |||| ||| || ||| Sbjct 7528 AAGACGCCCTTGCTGATGGGGGAGCCGGCAAACGTCTCGTAGGGGCCCTCCTTCATGGCA 7469 Query 153306 AGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGA 153365 | ||| | || || | ||||| |||| ||||| ||| ||| | || || || Sbjct 7468 ATTTCCATGGAGGCTTCCACGGCGCCGAAGTACATGGTCTCGAAGATGTCCTTGTTCAGC 7409 Query 153366 ACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCC 153425 | ||| || |||| | || | |||| | | ||||| || ||||| || Sbjct 7408 TGGTGCGCGTCCGGAGACTCGAAGGGGAACCGCATCTTGATGAAGGCATCCGCCAGGCCT 7349 Query 153426 TGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGA 153485 |||| ||| | |||||||||||| || | |||| ||| | || | | | || Sbjct 7348 TGGACACCAATGCCGATGGGTCGGTGGCGCATGTTGGAACGCTTGGCCTCCTCCACAGGG 7289 Query 153486 TAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTA 153545 ||| ||| ||||| | ||| |||||||| |||||| || || ||| | | Sbjct 7288 TAGAAGTTGATGTCGATGACGCGGTTCAGGTTGCGGGTCACCACCTTGGTGATCTCGTAC 7229 Query 153546 AGTTTCTCGAAATCATAGGT-----CATTTCGTCGACGCGTACGCA--TCGATTCAC--- 153595 || || | || ||||| | || | | | || | || || | ||| Sbjct 7228 AGACGCTGCAGGTCGTAGGTAGGGGCCTTGCCGCTGCCCGAAGGCTCCTCCAG-CACAAA 7170 Query 153596 -GGCAATAG--------ACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTG 153646 | | | || | || || || ||||||||| ||| |||| | || |||||| Sbjct 7169 GGCCGAGAGGTTGACCGAGGCAAGGTTGCAGACGGCCACCTCGTCGGGGGCGGTGTACTC 7110 Query 153647 CACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTT 153706 | |||||| | ||| |||||| | | || || || |||| ||| ||||| || || Sbjct 7109 GATGATCTCCGTGCAAAGGTTGGAGGACTTGATCACCCCCAGATTCTGCTGGTTCGACTT 7050 Query 153707 GCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGA- 153765 | | ||||| ||||| || || |||||||| || ||| ||||| || || | || | Sbjct 7049 GAGGTTGCAAGCGTCCTTAAACAGCATGTAGGGCGTGCCCGTCTCCACCTGGGAGTCCAA 6990 Query 153766 --CGATAAACCTATGCAGGTCCTGCGC-TCG--CACCC-GC-TGCCGATAGCGGCCCTCG 153818 || |||| ||| | || || | | |||| || |||| | | || || Sbjct 6989 CACGGCGAACCA---CAGCTGTTGGGCCTTGATCACCTTGCGTGCC--TTCCCGCTCT-- 6937 Query 153819 CTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGA 153878 ||||||| |||||| || ||| ||||| || ||| | ||| || | |||||| Sbjct 6936 -TCTCGTACGACTCGTAGAGCTGCTTGAACTCCTCCCCGCACACGTCCGCCAAGCCGGGG 6878 Query 153879 CACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGA 153938 |||| || || || | ||| ||||| | ||||| | ||||| ||||||||| | Sbjct 6877 CACTCATTGGGGCAAAACAGGGACCAGTCACCGTCGTTCTCCACGCGCTGCATGAACAAA 6818 Query 153939 TCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGC--CCATG- 153995 || ||| |||||| || || | ||||| || || | || ||| | || || || Sbjct 6817 TCAGGCGTCCAGAGGGCATAAAACAGGTCACGGGC-TCGC--TCCAGCTCGTTGCCGTGA 6761 Query 153996 ---TTGCGTTTCAGATTGAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGAC 154051 ||||| ||| | || | | | | |||||||||||||||| || || | ||| | Sbjct 6760 TTCTTGCG---CAGGTCAAGGAACTCGA-AGATGTCGGCGTGCCACGGCTCGAGGTAAAT 6705 Query 154052 GGCCAGGGCACCTTTACGCTTT---CCGCCCTGATCGACGTGGCGCACCATATTGTTGAA 154108 ||| | || || || |||||| || ||||| || |||| ||| || | | |||||| Sbjct 6704 GGCGAAGGAGCCCTTGCGCTTTCCCCCCCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAA 6645 Query 154109 GACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCC 154168 ||| |||| |||||| | | ||| | | ||| ||||| | ||| | | | | Sbjct 6644 GACACGCAGCATGGGCACGATACCGTTGGAGGTACCGTTCGAGCCGCGGATGTAGGAGTC 6585 Query 154169 GCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGC 154228 |||||||| | | || | | ||||| || |||||| || | || || ||||| || Sbjct 6584 ACGGGCGCGGATGTTGTGGATGGACACGCCGATCCCGCCGGCGAATTTGGAGATGGCGGC 6525 Query 154229 GCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAA 154288 ||| | || || ||||||||| |||||| || || | | ||| | ||| Sbjct 6524 GCATTGCTTGAGGGTGTCGTAGATGCCATCGATGGAGTCCTCCTTCATGGTGAGGAGGAA 6465 Query 154289 ACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGT 154348 || || | | ||||| | | || || || || ||||||||| | || ||||| Sbjct 6464 GCAGGAGGATAGCTGCGGGCGGGGGGTGCCGGCGTTGAAAAGGGTGGGAGTGGCATGCGT 6405 Query 154349 AAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTG 154408 || || |||||| ||| | | || || ||||||||| | |||| || || ||| Sbjct 6404 GAAGAGCTTTTGGGACATGAGGTTATAGGTCTCGATGGCGGCGTCGACGTCCTCCTTGTG 6345 Query 154409 AATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAAT 154468 ||||||| || |||||||||| ||||||||| || || || ||| | ||| || Sbjct 6344 GATGCCGATGGCCACGCGCATGATCATGTGCTGGGGGCGCTCCATGACGATGCCGTCCAT 6285 Query 154469 CTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGAAATACTTGTATTCAAAATC 154525 ||| | || || || || ||||| ||| | ||||| || | ||| || || || Sbjct 6284 CTTGAGCAGGTAGGACTTCTCCAGGGTCTTGAAGCCGAAGTAGTCGTAGTCGAAGTC 6228 >seq13286 Length=1322 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| |||||| || || || | | | |||||||| || ||||||||||| Sbjct 1117 CCGCCACGCAGACGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 1058 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| |||||| || || || || | |||| || ||||| ||||| || || Sbjct 1057 AGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 998 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| ||||| || | | || | |||||| | | |||||| Sbjct 997 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACG 938 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | ||||| || ||||| || || || || || ||||| Sbjct 937 TCGAGCGTGATGGTTTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 891 >seq22358 Length=3586 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||||||||||| ||||| || || || | | | ||||||||||| ||||||||||| Sbjct 3327 GCCGCCTCGCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCGA 3268 Query 138447 CATAGTACGCGAGTCCTCGAGTTG-TTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | || || |||||| || || || || | |||| || ||||| ||||| || | Sbjct 3267 GAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCG 3208 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | || || || ||||| ||| ||||| || | | || | ||||||| | | ||| | Sbjct 3207 GGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATGGTGTCGCTGGGCTCGA 3148 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | |||| || | || || || ||||| || || || || || ||||| Sbjct 3147 CATCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 3099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496114817765520