Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq7782 127 2e-24 seq13286 113 4e-20 seq22358 111 1e-19 seq5368 93.3 4e-14 seq21338 89.7 5e-13 >seq7782 Length=16676 Score = 127 bits (140), Expect = 2e-24 Identities = 331/497 (67%), Gaps = 16/497 (3%) Strand=Plus/Minus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCC---GGTTTTGTGCGCAGATAGTACATGCC 145775 |||||| |||||||| | || | ||||| || ||||| || ||||||||||| Sbjct 8090 GTCGACCGTGAACTGAATGGCAT---CGGCCTTGGGGCGGGTGCGAAGGTAGTACATGCC 8034 Query 145776 GGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACATGACC---GAGTACGT 145832 |||||||||| |||| ||| | ||| ||||| ||| || ||| | | | ||| Sbjct 8033 GGTCTTGAGCCCCTTCTTCCAGGAGTAGAAGTGCATG---GAGGTGAGCTGGGCGGGCGT 7977 Query 145833 GGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCC-CGGTCGG 145891 ||| | ||| | | || || || ||| ||| ||| | || ||| ||||||| Sbjct 7976 GGGGTTGGCCAGGTGGATGTTGAGGGACTGGGACTGGCAGATGTA-GGCGCCGCGGTCGG 7918 Query 145892 CGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGA 145951 | |||||||| || | |||||| || ||||| |||| || |||| ||||||| Sbjct 7917 CCGCCATGTCGATGACGCACTTCTGCCGGATCTCCCACACGGTCTTGTAGAGCTCCTTGA 7858 Query 145952 CGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGC 146011 | |||| || | | | ||| ||||| || ||| | | ||| || | ||||| Sbjct 7857 GCTCGCGGGGGATGCTGGCCACGTTTTGCACGGAGCCACGGTTGCCCATGATCTGGTTGC 7798 Query 146012 GCAATTCTGGAGTGTAAATGTTCAAG-TCTACGAGGGCCTTGATGAGATACTGGTTGACC 146070 ||| || || || | | || | || | ||| | ||| || |||| |||||| Sbjct 7797 GCACCTC-GGCGTTCCACAGCCCACGCTCGATCAGGTCGCTGAGCAGGTACTTGTTGACG 7739 Query 146071 ACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAAC 146130 | ||||| || || || || || | |||| |||| ||| || ||||||| Sbjct 7738 ATGGTGAACTCACCCGCTAGCACACGTCGGGAGTACATGTTGGAGGTAAAGGGCTCGACT 7679 Query 146131 GACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAA 146190 ||||||||||| || || |||||||| || | |||||| |||||| ||| | ||| | Sbjct 7678 GACTCGTTGTTGCCTAGGATCTGCGCGGTGGAAGCGGTGGGCATGGGCGCGAGCAGGAGG 7619 Query 146191 GAGTTTCTCACGCCGTG 146207 || || | ||||||||| Sbjct 7618 GAATTGCGCACGCCGTG 7602 >seq13286 Length=1322 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||||||||| || | || ||||| || || || ||||| || | |||||| Sbjct 1105 CGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGCCCG 1046 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | |||||||| ||||| || |||||||||||| Sbjct 1045 TCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 986 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | | |||| ||||| | ||| || |||| || | Sbjct 985 TCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCGAGCGTGATG 926 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| ||||| || || || || || ||||| Sbjct 925 GTTTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 891 >seq22358 Length=3586 Score = 111 bits (122), Expect = 1e-19 Identities = 155/216 (72%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||||| ||||| || ||||| || | |||||| Sbjct 3314 CGCAGGACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCG 3255 Query 126959 TCGTCTAGCTGTTTTCCA-GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 || || ||||| || || ||| |||| | |||||||| ||||| || ||||||||||| Sbjct 3254 TCCTCCAGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTT 3195 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | | |||| |||||| | |||||| |||| ||| | Sbjct 3194 GTCCTGGATCTTTTGCTTCACATTCTCGATGGTGTCGCTGGGCTCGACATCGAGGGTGAT 3135 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || || || || ||||| Sbjct 3134 GGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 3099 >seq5368 Length=5397 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || || || |||| | ||||||||| || || || ||||||||||| Sbjct 2602 ATCCTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTT 2661 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| ||||| || | | |||| |||||| | ||| || |||| ||| | Sbjct 2662 GTCCTGGATCTTCTGTTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGAT 2721 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || || || || ||||| Sbjct 2722 GGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 2757 >seq21338 Length=400 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | | ||||| | || || | ||||| || Sbjct 191 GTGGACTCCTTCTGGATTTTGTAGTCCGCGACTGTGCGCGTGTCCTCCACCTGTTCACCC 250 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||||| || | ||||| |||||||| || |||||||||||| | || | |||||| Sbjct 251 GCGTAAATGAGCCGCTGTTGATCGGGCGGGATGCCCTCCTTGACTTCAATCTCCTGCTTC 310 Query 127037 AGTTGTTC-GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | || | || |||||| | | |||| | ||| || | |||||||| ||||| || Sbjct 311 A-AAGTCCAGATGGTGTCGGAAGGATCGATATTGACTGTAATGGTTTTGCCAGTCAGCGT 369 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| || || |||||||| Sbjct 370 TTTGACGAAGATCTGCAT 387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475359392005840