Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq566 616 2e-171 seq288 419 3e-112 seq620 242 5e-59 seq49 150 2e-31 seq60 96.9 4e-15 >seq566 Length=2184 Score = 616 bits (682), Expect = 2e-171 Identities = 750/1020 (74%), Gaps = 2/1020 (0%) Strand=Plus/Minus Query 6257 TATCACAGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGT 6316 ||| | || ||||| || | ||| || || || || || ||||||||||||||||||||| Sbjct 1610 TATTAAAGGGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACAAAGTTTTCATGTGGT 1551 Query 6317 TGATCCACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAG 6376 || || || |||||||| | | | |||||| || |||| ||| || || || ||| Sbjct 1550 TGGTCTTGTGCGGCCATCCATGATCTAATACCTTCGTTTAATAAGATATTTTTAGTGTAG 1491 Query 6377 AACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCT 6436 || || || || |||||||| || ||||| | | ||||| || || ||||| || ||| Sbjct 1490 AAAGTTTCAAATTCTGGATCTTCAGCTGCACGAAGTTCTTGAGATACGAAGTCGTATGCT 1431 Query 6437 CTAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGA 6496 || | || | ||| | ||| | |||||||| | ||||| | ||| | || ||| Sbjct 1430 CTTAAATTTAATGCTAAACCTACAATACCAAAAGAACTTGTCCATAAACCTGTTACTGGA 1371 Query 6497 ACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGA 6556 ||||| | ||| ||||| || |||||||| || || ||| || | ||| || || ||| Sbjct 1370 ACAAATAACATGAAGAAGTGAAGCCAACGTTTGTTAGAGAAAGCTACACCGAAAATTTGA 1311 Query 6557 GACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAAC 6616 |||||||| | ||| || || ||||| ||||| || || ||| |||||| || |||| Sbjct 1310 GACCAGAATCTATTCGCTGTTACCATTGAATAAGTTTCTTCTGATTGTGTTGGTGTAAAC 1251 Query 6617 GCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCG 6676 || ||| || |||| |||||||||||||| | || || ||||||||||| || Sbjct 1250 GCACGGAATGTGTTTGCAGCATCACCATCTTCAAATAGTGTGTTTTCTACAGTAGCTCCA 1191 Query 6677 TGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGG 6736 ||||| ||| | | ||||| |||||||| || |||||||| ||||||||||| || ||| Sbjct 1190 TGAATTGCAGATAATAATGCACCACCTAAAATCCCTGCTACGCCCATCATATGGAATGGG 1131 Query 6737 TTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACA 6796 || || |||||||| ||||| || |||| ||| | |||||||||||| || |||||||| Sbjct 1130 TTAAGTGTCCAGTTATGGAAACCTTGTAAGAATAATAAGAAGCGGAAAATAGCTGCAACC 1071 Query 6797 CCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGAC 6856 ||||| || || ||||||||||| | ||||| |||||||| || | || ||||| Sbjct 1070 CCAAAACTTGGAGCGAAGAACCAACTTGCTTGTCCTAGAGGATAGATTAAGAATACAGAA 1011 Query 6857 ACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA 6916 || || || ||||| || ||||| || || ||||| || || ||||||||||| || ||| Sbjct 1010 ACGAATACCGCAATAGGTCCAGAGAATGCAATTGCGTTATATGGACGAATACCTACAAGA 951 Query 6917 CGTGCGATCTCAAACTGCCG-AAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGC 6975 || |||||||| || || || || || ||| || || | |||| || || || | || Sbjct 950 CGAGCGATCTCGAATTGACGTAAACA-GAATCCAATTAAACCAAATGCACCATGTAATGC 892 Query 6976 CACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGG 7035 | ||||| ||||| ||| |||| ||| ||||| || ||||||||| || ||||| || Sbjct 891 GATAAAAGCCCATAATCCACCAATTTGAAGCCAACGAGTGAAATCTCCTTGTGCTTCAGG 832 Query 7036 ACCCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGT 7095 ||||||| | || || |||||| || | | || ||||| |||||||| || |||| Sbjct 831 TCCCCATAATAAAATTAAGGAATGACCCATACTGTTTGCAGGTGTTGATACCGCTACAGT 772 Query 7096 AAGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGAC 7155 | ||| || ||||| || || || ||||| || | || || || ||||| || || Sbjct 771 TAAGAAGTTGCATCCTTCTAGGTAAGAAGATGCTAATCCATGTGTATACCAAGATGTAAC 712 Query 7156 GAAAGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAG 7215 ||||| || || || | ||| || || | ||| || | || || ||||| | | ||| Sbjct 711 AAAAGTCGTACCTGTTAACCATCCACCAACTGCAAGAAATGCTGTTGGGAATAATAAAAG 652 Query 7216 ACCTGACCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 ||||||||||||| ||| ||||| | ||| || || | ||||||||||| || ||||| Sbjct 651 GCCTGACCAACCAATAAATACGAAACGATCTCGTTTTAACCAGTCATCGACTAAGTCAAA 592 >seq288 Length=849 Score = 419 bits (464), Expect = 3e-112 Identities = 419/540 (78%), Gaps = 4/540 (1%) Strand=Plus/Minus Query 7956 CACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGA 8015 ||||||| || || ||| ||||| |||||||| || |||||||| ||||||||||| | Sbjct 849 CACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATA 790 Query 8016 CAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTT 8075 | | |||| ||||||| |||||||| || || | ||||||| | |||||||| ||||| Sbjct 789 CTAACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTT 730 Query 8076 GACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTA 8135 | |||| || || || | |||||| |||||||||||||| |||||||| ||| | |||| Sbjct 729 GTCCGATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTA 670 Query 8136 CACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATG 8195 | | ||||| |||||||| |||| |||||| ||||||||| ||||| |||||||| | Sbjct 669 CGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTA-G 611 Query 8196 CATAGATAC--CGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAG 8253 || || ||| | | | |||||| || | || |||||| |||||||||||||||| || Sbjct 610 CA-AGCTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAG 552 Query 8254 CCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGA 8313 |||||| || | ||| || |||||||| | || |||||||| | ||| |||| |||||| Sbjct 551 CCACTCGTCTAAAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCGATAGAGTTAGA 492 Query 8314 AGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGG 8373 | ||||| ||| ||||||| |||||||||||| || || | || || ||||| || || Sbjct 491 ACTAGGAATAACTGCACCAGTGATGATGTTGTTTCCGTATAAAAGTGATCCAGCAACTGG 432 Query 8374 TTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAAACAAAT 8433 ||||||||| ||||| || || || ||||| ||||||| ||||||| |||||| || | Sbjct 431 TTCACGGATACCGTCGATATCAACTGGAGGTGCAGCGATAAAAGCGATGATGAAGCAGCT 372 Query 8434 AGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATT 8493 | ||| | | | || || ||||| | |||||||||||||||| || | ||| || Sbjct 371 TGTAGCTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTT 312 >seq620 Length=282 Score = 242 bits (268), Expect = 5e-59 Identities = 226/284 (80%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 7673 CCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATGCCAACAACT 7732 || || | |||||||||||| || ||||||||||||||||| |||||||| || |||||| Sbjct 282 CCATTTAAGTTGAATGCCATAGTACTAACACCAAGAGCAGTTAACCAGATACCTACAACT 223 Query 7733 GGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAG 7792 ||||| || || | ||||||||| | | ||| ||||||||||| |||||||||||| Sbjct 222 GGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGAGAGTTGTTGAAACTCGCGTATTGGAAG 163 Query 7793 ATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACCG 7852 || | ||| |||||||| ||||| ||||| ||||||||||| || ||||||||||| ||| Sbjct 162 ATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGTCCG 103 Query 7853 AACTTATAACCATAGTT--CTGGGACTCAGAC-TCAGTGGTTTCACGAACCAGAGAAGAG 7909 || || ||||| ||||| | | || | | | ||| |||||||| | | | ||| Sbjct 102 AATTTGTAACCGTAGTTAGCAGATACGCCGTCTTCA---GTTTCACGGATTAAACTAGAT 46 Query 7910 GTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAA 7953 |||||||| ||||| ||||| |||||||| | ||| |||||||| Sbjct 45 GTTACAAGAGAACCGTGCATAGCACTGAATAAAGACCCACCAAA 2 >seq49 Length=2147 Score = 150 bits (166), Expect = 2e-31 Identities = 158/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 7495 AACAGCAGGTGCTTTGAGAGCAACAGGAGTGTTCTCAGCAGCAGCAAGGTCAAGAGGGAA 7554 ||||||||| || || | ||||||||| | || | || | || |||||||| Sbjct 1940 AACAGCAGGAGCGTTTAATGCAACAGGAAGAACATTAGATACGGCTAAATCTAGAGGGAA 1999 Query 7555 GTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGGTTGAGCACGTC 7614 |||||| || ||||| |||||||| |||||||| || | | |||||||||||| | ||| Sbjct 2000 GTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGGTTGATAATGTC 2059 Query 7615 TGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTGAAGTTGAAACC 7674 ||||| ||||| | || || ||||| | ||||| | || ||||||||||||||||| Sbjct 2060 AGCCCAAGTGTTGATCACGCGGCCTTGGCTATCAACAACCGATTGGTTGAAGTTGAAACC 2119 Query 7675 GTTGAGGTTGAATGCCATGGTGCTAACA 7702 || | |||||||||||| || |||||| Sbjct 2120 ATTTAAGTTGAATGCCATAGTACTAACA 2147 >seq60 Length=5343 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 176133 GGATTTGAACCCCCGTAGGCAGAGCCAGCGGATTTACAGTCCGCCTCCATTAACCACTCG 176192 ||||||||||| ||||||| |||||||||||||||||||||||| || ||||||||||| Sbjct 2259 GGATTTGAACCAACGTAGGCTGAGCCAGCGGATTTACAGTCCGCCCCCTTTAACCACTCG 2200 Query 176193 GACACCTACCCTA 176205 | || | |||||| Sbjct 2199 GGCATCGACCCTA 2187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621939787861040