Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq7782 163 3e-35 seq2632 143 3e-29 seq17508 129 7e-25 seq13862 102 1e-16 seq5822 91.5 2e-13 >seq7782 Length=16676 Score = 163 bits (180), Expect = 3e-35 Identities = 583/899 (65%), Gaps = 17/899 (2%) Strand=Plus/Minus Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 |||||||| || || ||||| || | || || ||| || |||| |||| || Sbjct 7117 GTGTACTCGATGATCTCCGTGCAAAGGTTGGAGGACTTGATCACCCCCAGATTCTGCTGG 7058 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || ||||| ||| || || ||||| | ||||| || ||||| ||||||||| ||| Sbjct 7057 TTCGACTTGAGGTTGCAAGCGTCCTTAAACAGCATGTAGGGCGTGCCCGTCTCCACCTGG 6998 Query 116593 GACTTGAGAATAGCCTTCCATACATCGGCGGC-TGGCACAG-TGGCGTTGGCTCGCCCCT 116650 || | | | || ||| | | ||| | | || | |||| | || || || Sbjct 6997 GAGTCCAACACGGCGAACCACAGCTGTTGGGCCTTGATCACCTTGCGT-GCCTTCCCGCT 6939 Query 116651 CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACC-CACAGCCTCTGAGAGCCCT 116709 | || |||||| |||||| || ||||| || || |||| | || | | || Sbjct 6938 CTTC-TCGTACGACTCGTAGAGCTGCTTGAACTCCTCCCCGCACA-CGTCCGCCAAGCCG 6881 Query 116710 GGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 116769 || || || || || || || ||||| | ||| | | ||| || |||| |||||| Sbjct 6880 GGGCACTCATTGGGGCAAAACAGGGACCAGTCACCGTCGTTCTCCACGCGCTGCATGAAC 6821 Query 116770 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCCCCT 116827 | || || ||||||| || | || || || || || ||| | || | || | Sbjct 6820 AAATCAGGCGTCCAGAGGGCATAAAACAGGTCACGG--GCTCGCTCCAGCTCGTTGCCGT 6763 Query 116828 GATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCG 116887 |||| |||| || | || || | ||| || ||||||||||| || ||||| | | Sbjct 6762 GATTCTTGCGCAGGTCAAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGG 6703 Query 116888 CGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATA 116944 ||| || |||||||| | || |||||| || || | ||||| |||| || | Sbjct 6702 CGAAGGAGCCCTTGCGCTTTCCCCCCCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGA 6643 Query 116945 CGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTT 117002 | || ||||| || | |||||| | || || || | || || | || ||| | Sbjct 6642 CACGCAGCATGGGCACGATACCGTTGGAGGTACCGTTCGAGCCGCGGATGTAGGAGTCAC 6583 Query 117003 GTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGC 117062 | ||| | || | ||||||| || || || || || || | || ||||| || Sbjct 6582 G--GGCGCGGATGTTGTGGATGGACACGCCGATCCCGCCGGCGAATTTGGAGATGGCGGC 6525 Query 117063 GCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAA 117122 ||| | | |||| || ||||||| |||||||| ||||| |||| | | || |||||| Sbjct 6524 GCATTGCTTGAGGGTGTCGTAGATGCCATCGATGGAGTCCTCCTTCATGGTGAGGAGGAA 6465 Query 117123 GCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGAT 117182 |||| || | || || | || || || |||||||| ||||| || || || || | Sbjct 6464 GCAGGAGGATAGCTGCGGGCGGGGGGTGCCGGCGTTGAAAAGGGTGGGAGTGGCATGCGT 6405 Query 117183 GAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTG 117242 ||| | ||||||||| | |||||||| | | | | | | ||| ||| ||| Sbjct 6404 GAAGAGCTTTTGGGACATGAGGTTATAGGTCTCGATGGCGGCGTCGACGTCCTCCTTGTG 6345 Query 117243 AATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAG 117302 || ||||| | || ||||| | ||||| ||||| ||||| | ||| || || | Sbjct 6344 GATGCCGATGGCCACGCGCATGATCATGTGCTGGGGGCGCTCCATGACGATGCCGTCCAT 6285 Query 117303 CCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTCCC 117361 | | | ||||| |||||||| |||||||| || || ||| | |||| |||||| Sbjct 6284 CTTGAGCAGGTAGGACTTCTCCAGGGTCTTGAAGCCGAAGTAGTCGTAGTCGAAGTCCC 6226 Score = 91.5 bits (100), Expect = 2e-13 Identities = 311/480 (65%), Gaps = 16/480 (3%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||||||||||| ||||||| | || ||||||||||| || |||||||||| Sbjct 8082 TGAACTGAATGGCATCGGCCTTGGGGCGGGTGCGAAGGTAGTACATGCCGGTCTTGAGCC 8023 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 ||| |||||||| || | ||||| |||| | || || | | || || | ||| | Sbjct 8022 CCTTCTTCCAGGAGTAGAAGTGCATGGAGGTGAGCTGGGCGGGCGTGGGGTTGGCCAGGT 7963 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 || ||| | ||||| || |||| || || || || |||||||| || || | Sbjct 7962 GGATGTTGAGGGACTGGGACTGGCAGATGTAGGCGCCGCGGTCGGCCGCCATGTCGATGA 7903 Query 115706 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGA--- 115762 | |||| | ||| |||||||| || ||||||| | ||| | || |||| Sbjct 7902 CGCACTTCTGCCGGATCTCCCACACGGTCTTGTAGAGCTCCTTGAGCTCGCGGGGGATGC 7843 Query 115763 TATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTT---CATATC-- 115817 | ||||| ||||| | ||||||| ||| |||||| | || || || Sbjct 7842 TGGCCACG---TTTTGCACGGAGCCAC---GGTTGCCCATGATCTGGTTGCGCACCTCGG 7789 Query 115818 CTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAA 115877 | || ||| || ||| || | || || | |||| ||| ||||| | || Sbjct 7788 CGTT--CCACAGCCCACGCTCGATCAGGTCGCTGAGCAGGTACTTGTTGACGATGGTGAA 7731 Query 115878 CTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATT 115937 ||||||||| || |||| || ||||||| || | ||||| | |||| || Sbjct 7730 CTCACCCGCTAGCACACGTCGGGAGTACATGTTGGAGGTAAAGGGCTCGACTGACTCGTT 7671 Query 115938 GTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 ||| || | ||| || || ||||| || ||||||||||| || | || ||| ||||| Sbjct 7670 GTTGCCTAGGATCTGCGCGGTGGAAGCGGTGGGCATGGGCGCGAGCAGGAGGGAATTGCG 7611 >seq2632 Length=5999 Score = 143 bits (158), Expect = 3e-29 Identities = 295/435 (68%), Gaps = 18/435 (4%) Strand=Plus/Plus Query 12680 GGGTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAG 12739 ||| ||| |||||||| ||||| || || || || ||||||||||| | || || Sbjct 4359 GGGCAGGTCCACGGTGACGCGGCGATCGAAACGGCCGGGACGGAGGAGGGCCTGATCCAG 4418 Query 12740 GATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATC 12799 || ||| |||||| || || |||||||| | |||||| | | | |||||||| || Sbjct 4419 GACGTCAGCGCGGTTGGTGGCGGCGATGACGATGATGCCGGGGTTGCCCTCGAAGCCGTC 4478 Query 12800 CATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCGGGCATACCA 12857 ||| || |||| || ||||| | ||| || ||||| || || || ||| || | | Sbjct 4479 CATTTCCGTCAGCAGCTGATTCAAGGTCTGCTCACGCTCGTCGTTTCCGCCCGCGAA--A 4536 Query 12858 CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGG-TTG 12916 ||||||| || || ||| || ||||| || || || ||||||| ||| || || | Sbjct 4537 CCCGCACCACGCTGGCGACCCACCGCGTCGATCTCATCGATGAAAATGATGCAAGGCGCG 4596 Query 12917 ATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACAT 12976 | ||| || | | || || || || ||||| | | ||||| |||||||||||||| Sbjct 4597 TTCTTCTTGGCCTGC-TCGAACATGTCACGCACACGCGACGCACCCACACCCACAAACAT 4655 Query 12977 CTCCACAAAAT------TGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGC 13030 |||||| || | ||| |||||| ||||| || || || ||||| || Sbjct 4656 CTCCACGAACTCGGACCCGGCCGCGGAA------ATGAAAGGCACACCAGACTCACCTGC 4709 Query 13031 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACG 13090 | ||| ||| || || ||||| || || || || ||| | || | |||| || Sbjct 4710 CACGGCCTTGGCCAGCAGCGTCTTACCGGTACCGGGGGGCCCGTCCAGGATCACACCGCG 4769 Query 13091 TGGGATCCTGGCACC 13105 || ||| ||||||| Sbjct 4770 AGGAATCTTGGCACC 4784 >seq17508 Length=3941 Score = 129 bits (142), Expect = 7e-25 Identities = 367/559 (66%), Gaps = 9/559 (2%) Strand=Plus/Minus Query 116416 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 116475 ||| ||||||| ||| ||| || |||| ||||||||||| ||| ||| || Sbjct 2988 ACAAACTTAGGCAGGACGACCGAAGCCAAATTACACACAGCCACCTCCTCCGGGCTCGTA 2929 Query 116476 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 116535 |||| ||||| ||||||||||| || ||||| ||| || || | |||| || || Sbjct 2928 TACTGGATAATCTCCGTACACAAGTTCGAACTGCGAATCGTCCCTAGATTCTGCTGGTTA 2869 Query 116536 GACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGAC 116595 ||| |||||||| || || || |||||||| ||||| |||||||| | || || Sbjct 2868 CTCTTCAGATTACACGCGTCTTTATAAAGCATATACGGCGTGCCCGTCTCGATCTGTGAG 2809 Query 116596 TTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCC 116655 | | ||| || ||| | || || |||| || ||| ||| ||| | | Sbjct 2808 TCCAAAATCGCGAACCACAGGTCTTGCGCACGCACGGTTTTCTTGACTCTTCCCGCTTTT 2749 Query 116656 TCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACC--CACAGCCTCTGAGAGCCCTGGTG 116713 || || | ||| |||||||| ||| | | || ||| | | | |||| | | Sbjct 2748 TCATATTGCAGGTACAGGGCCTCGAACGCCTTGCCATGGCAGTCGCCCA-AGCC--AGGG 2692 Query 116714 CCTT-ATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 116772 | || ||| ||||| | | ||||| ||| ||||||| |||| |||||| || | Sbjct 2691 CATTGATCGGGACACATCAACGACCACACCCCATCCTCCTCCACCCTCTTCATAAACAAA 2632 Query 116773 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 116832 || |||||||| ||| | |||| ||||| || || || ||||| | ||| ||||| Sbjct 2631 TCAGGGATCCACAGCCCATAGAACAGATCACGCGCCCGCGCCTCTTCCTTCCCATGATTT 2572 Query 116833 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 116892 | ||| || | | || | |||||||| |||||||| || | ||| | ||| | Sbjct 2571 TTCCTCAAGTCAAGCACCTCAAAAATATCCGCATGCCACGGCTCAATGTAAATCGCAAAG 2512 Query 116893 GACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGA 116949 | |||| || | || |||| | ||||| | |||||| ||| ||| || || Sbjct 2511 GCCCCCGGCCGCTTCCCCCCGCCCTGATCAACATATCGCGCCGTCACGTCAAACACACGC 2452 Query 116950 AGCATTGGAATGATACCAT 116968 ||||| || | | ||||| Sbjct 2451 AGCATCGGCACTAAACCAT 2433 >seq13862 Length=727 Score = 102 bits (112), Expect = 1e-16 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| | |||| |||||||||||||||||| | ||||| |||||| |||||||||| Sbjct 328 GGCATCAACCCCCTCTTCTTCAACCAGAAAATAGAGCAAAACGAGCCACTGAAGAAGATC 387 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 ||||| || ||| || |||| || ||||| || |||||| |||| | ||| || Sbjct 388 CCCTCGACGGCCGCAAAGGCAATCAGCCGCTCAGCGAAGGAGGCATACTTCCTGTCACAC 447 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG 127759 ||| | |||||||| ||||| || ||| ||||| || | ||| || | | | Sbjct 448 CACCGGAGGGCCCACTGCGCCTTGCGTCGGACACAGGGGACCGTGTCGATAGCATTGAGG 507 Query 127760 AGTTCCTTCTTTTC-TGATGGATCTTTGATGTACTTATCTATGAG 127803 || | | ||| || || | || |||||||| | || ||||| Sbjct 508 AGCTTGTGCTTCTCTTGCCCGTTC-TTGATGTAGGTGTCGATGAG 551 >seq5822 Length=3490 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 31052 TATGGGGAGGAAGAAATTAAAGCCGTTGAGGATTGCCTTCGCGATGGCTGGCTCGCTGGC 31111 || || |||| || ||||| ||||| || | ||||| || ||||||||||| || ||| Sbjct 638 TACGGTGAGGCCGAGATTAAGGCCGTGGACCAATGCCTGCGTGATGGCTGGCTGGCAGGC 579 Query 31112 TTTGGTG-ATCGCACTATGGAGTTTGAGAAGAGGGTGGCCGACACATTCGGAAAGAGACA 31170 || || | | ||||| || ||||| |||||| ||||||||| || ||||| |||| Sbjct 578 TTCGGGGAAGCGCACGATTGAGTTCGAGAAGCGGGTGGCCGCCATGTTCGGCAAGAAGTT 519 Query 31171 CGGACTCTTTGTAAA 31185 ||| || ||||| || Sbjct 518 CGGCCTGTTTGTCAA 504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613324750627560