Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq7782 192 9e-44 seq17508 118 2e-21 >seq7782 Length=16676 Score = 192 bits (212), Expect = 9e-44 Identities = 469/686 (68%), Gaps = 26/686 (4%) Strand=Plus/Minus Query 203838 TCTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTACA 203894 ||||||| ||||||||||||||||| | |||| || | | | | || ||||||| Sbjct 8094 TCTTGTCGACCGTGAACTGAATGGCAT---CGGCCTTGGGGCGGGTGCGAAGGTAGTACA 8038 Query 203895 TGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTG-CTCACG 203953 |||||||||| || ||||||| ||| ||| | ||||||||| | || | | | || Sbjct 8037 TGCCGGTCTTGAGCCCCTTCTTCCAGGAGTAGAAGTGCATGGAGGTGAGCTGGGCGGGCG 7978 Query 203954 TTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATC 204012 | ||||| ||||| ||| ||||| || |||||| ||| |||| | |||||| || || Sbjct 7977 T-GGGGTTGGCCAGGTGGATGTTGAGGGACTGGGACTGGCAGATGTA-GGCGCCGCGGTC 7920 Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCT 204072 || ||||| | ||| | | ||||||| ||||||||||| |||||| | | || || Sbjct 7919 GGCCGCCATGTCGATGACGCACTTCTGCCGGATCTCCCACACGGTCTTGTAGAGCTC-CT 7861 Query 204073 GGTGTGTTGAGGCACAT-CTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT- 204129 | | | | || || || |||||| || | ||||| || | |||| | ||| Sbjct 7860 TGAG-CTCGCGGGGGATGCTGGCCACGTTTTGCACGGAGCCACGGTTGCCCATGA-TCTG 7803 Query 204130 CATCCTCGTCTCCTCCCCCCACATGCCCAACCT-GATCAGCTCCCGCACCAGGTGGGGGT 204188 | | | ||| | ||||| ||||| || |||||| || | | ||||| || Sbjct 7802 GTTGCGCACCTCGGCGTTCCACA-GCCCACGCTCGATCAGGTCGCTGAGCAGGTACTTGT 7744 Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248 ||| ||| || || || | ||||| | ||||| | ||| |||| ||| || || | Sbjct 7743 TGACGATGGTGAACTCACCCGCTAGCACACGTCGGGAGTACATGTTGGAGGTAAAGGGCT 7684 Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308 ||| | |||||||||||| | ||||| |||||| || ||||||||||| || || | Sbjct 7683 CGACTGACTCGTTGTTGCCTAGGATCTGCGCGGTGGAAGCGGTGGGCATGGGCGCGAGCA 7624 Query 204309 GCAGGGAGTTGCGCACACCGTATTTTTGGACCCT-GCGCTTCAGAGAGGTCCAGTCGTGC 204367 | ||||| |||||||| |||| | |||||| | |||| || || |||||| | Sbjct 7623 GGAGGGAATTGCGCACGCCGTGCTCCTGGACCTTGGCGC-GGAGGCCGGGCCAGTC--CC 7567 Query 204368 ATC--GCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGC 204425 | | | ||| | ||||||||||||||||| || |||| ||| | |||| ||| Sbjct 7566 AGCGGGTGGAGGGGGTGACGCCCCACATGTCGAATTGGAAGACGCCCTTGCTGATGGGGG 7507 Query 204426 TGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCA-CGAGGCGGCCATG 204484 ||| ||||| || || |||| | || || || || ||||| ||| | Sbjct 7506 AGCCGGCAAACGTCTCGTAGGGGCCCTCCT-TCATGGCAATTTCCATGGAGGCTTCCACG 7448 Query 204485 GCGTGATAGTACATGGTCTCAAAGAT 204510 ||| ||||||||||||| ||||| Sbjct 7447 GCGCCGAAGTACATGGTCTCGAAGAT 7422 Score = 181 bits (200), Expect = 2e-40 Identities = 565/864 (65%), Gaps = 18/864 (2%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| | |||||| ||||| | ||| | |||| | |||||||| || ||||||||| || Sbjct 7112 CTCGATGATCTCCGTGCAAAGGTTGGAGGACTTGATCACCCCCAGATTCTGCTGGTTCGA 7053 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002 |||| |||| || | |||||| ||| |||| | ||| | || |||||| ||| || Sbjct 7052 CTTGAGGTTGCAAGCGTCCTTAAACAGCATGTAGGGCGTGCCCGTCTCCACCTGGGAGTC 6993 Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCTCCA----CTTGCTTCACGTACATCCCTTGAG 205058 || | | | ||||| | | |||| | ||||| | | | | | ||| Sbjct 6992 CAACACGGCGAACCACAGCTGTTGGGCCTTGATCACCTTGCGTGCCTTCCCGCTCTT--- 6936 Query 205059 ACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGAC 205118 |||||| ||| ||| | || || ||| |||||||| || || || | Sbjct 6935 -CTCGTACGACTCGTAGAGCTGCTTGAACTCCTCCCCGCACACGTCCGCCAAGCCGGGGC 6877 Query 205119 ATTTTTTGGGACACATCAGAGACCA--CATCTGATCGTCTTTCACCCTCTCCATAAACAG 205176 | | ||||| || | ||| ||||| || | |||| | ||| | || ||| |||| Sbjct 6876 ACTCATTGGGGCAAAACAGGGACCAGTCACCG--TCGTTCTCCACGCGCTGCATGAACAA 6819 Query 205177 GTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCG-TCGTCTCCAAGGT 205235 || |||| ||| | |||||||| |||||||| | | | | |||| || | | Sbjct 6818 ATCAGGCGTCCAGAGGGCATAAAACAGGTCACGGGCTCGC-TCCAGCTCGTTGCCGTGAT 6760 Query 205236 TCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCC 205294 |||| || ||| || || || | |||||||||||||||||||| | | | ||| Sbjct 6759 TCTTGCGCAGGTCAAGG-AACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCG 6701 Query 205295 ATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACT 205354 | | ||| | ||| ||| ||||||||||| ||| | | | ||||||| || Sbjct 6700 AAGGAGCCCTTGCGCTTTCCCCCCCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACA 6641 Query 205355 CGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCA 205414 |||||||| ||||| | |||||||| ||| ||||||| || | |||| ||| | Sbjct 6640 CGCAGCATGGGCACGATACCGTTGGAGGTACCGTTCGAGCCGCGGATGTAGGAGTCACGG 6581 Query 205415 GCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCAC 205474 || | | |||| ||||| | |||| |||||||| | | |||| ||| |||||| Sbjct 6580 GCGCGGATGTTGTGGATGGACACGCCGATCCCGCCGGCGAATTTGGAGATGGCGGCGCAT 6521 Query 205475 T-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCA 205533 | |||| || ||| ||||||||| ||||||| || ||| || || | || |||| Sbjct 6520 TGCTTG-AGGGTGTCGTAGATGCCATCGATGGAGTCCTCCTTCATGGTGAGGAGGAAGCA 6462 Query 205534 CGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAA 205593 || | |||| | | |||||| |||| ||| || ||||| |||| || |||| Sbjct 6461 GGAGGATAGCTGCGGGCGGGGGGTGCCGGCGTTGAAAAGGGTGGGAGTGGCATGCGTGAA 6402 Query 205594 GCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAAT 205653 | |||| | | || | |||||||| | || || | || ||| || Sbjct 6401 GAGCTTTTGGGACATGAGGTTATAGGTCTCGATGGCGGCGTCGACGTCCTCCTTGTGGAT 6342 Query 205654 ACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACCTT 205713 || ||||| | | ||||| | ||| || || | |||||| || | ||| || ||| Sbjct 6341 GCCGATGGCCACGCGCATGATCATGTGCTGGGGGCGCTCCATGACGATGCCGTCCATCTT 6282 Query 205714 GAGCAGATAGGCTCTCTCTAGGGT 205737 |||||| |||| |||| ||||| Sbjct 6281 GAGCAGGTAGGACTTCTCCAGGGT 6258 >seq17508 Length=3941 Score = 118 bits (130), Expect = 2e-21 Identities = 200/290 (69%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 205112 CCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATA 205171 || || |||| | ||||||||||| ||||||| | ||| || | |||||||| |||| Sbjct 2697 CCAGGGCATTGATCGGGACACATCAACGACCACACCCCATCCTCCTCCACCCTCTTCATA 2638 Query 205172 AACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCA 205231 |||| || ||||||||| || || ||||||||||| |||| | || | ||| Sbjct 2637 AACAAATCAGGGATCCACAGCCCATAGAACAGATCACGCGCCCGCGCCTCTTCCTTCCCA 2578 Query 205232 AGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACG 205291 | || || ||||||| ||| | ||| || || ||||||||||| | | | Sbjct 2577 TGATTTTTCCTCAAGTCAAGCACCTCAAAAATATCCGCATGCCACGGCTCAATGTAAATC 2518 Query 205292 GCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAA 205351 || | || || |||| ||| ||| ||||| || || || | | || ||| || Sbjct 2517 GCAAAGGCCCCCGGCCGCTTCCCCCCGCCCTGATCAACATATCGCGCCGTCACGTCAAAC 2458 Query 205352 ACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGAT 205401 || |||||||||||||| | ||| ||| ||||| ||||| | ||||| Sbjct 2457 ACACGCAGCATCGGCACTAAACCATTGCTCGTCCCCTTCGTCCCCTTGAT 2408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794918730782960