Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq22358 136 9e-27 seq13286 123 6e-23 seq5368 104 6e-17 >seq22358 Length=3586 Score = 136 bits (150), Expect = 9e-27 Identities = 163/220 (74%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | |||||| | ||| || || ||||||||||||| ||||||||| | | || Sbjct 3321 TCGCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGCGT 3262 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCG-GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTC 199526 | || || ||||||||||| || ||||||||||| ||||||||||| || || | Sbjct 3261 GCGGCCGTCCTCCAGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGC 3202 Query 199527 CTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 | || ||||| |||||||||||||| |||| |||||| | | || ||||| | Sbjct 3201 CCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATGGTGTCGCTGGGCTCGACATCGA 3142 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || || || || ||||| Sbjct 3141 GGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTG 3102 >seq13286 Length=1322 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || |||||||| |||| ||||||||| | | || | || || |||||||| Sbjct 1094 GTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGCCCGTCCTCCAGCTG 1035 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| || ||||||||||| ||||||||||| || || || || ||||| ||||| Sbjct 1034 CTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTT 975 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||||||||| |||| ||||| | | || || || | |||||| || || ||||| Sbjct 974 TTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCGAGCGTGATGGTTTTGCCCGT 915 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| Sbjct 914 CAGGGTCTTGACGAAGATTTG 894 >seq5368 Length=5397 Score = 104 bits (114), Expect = 6e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| ||||||||||| ||||| |||||||| ||||||||||| || || || || Sbjct 2600 CCATCCTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCC 2659 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| ||||| || |||||| |||| |||||| | | || ||||| | ||| Sbjct 2660 TTGTCCTGGATCTTCTGTTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTG 2719 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| ||||| || || || || || ||||| Sbjct 2720 ATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTG 2754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178562238538997