Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq13286 188 8e-43 seq22358 168 8e-37 seq5368 118 1e-21 seq10165 104 3e-17 seq21338 89.7 6e-13 seq5489 82.4 9e-11 >seq13286 Length=1322 Score = 188 bits (208), Expect = 8e-43 Identities = 173/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| |||| || |||||| ||||| |||||||| || || |||||| | Sbjct 1106 ACGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGCCC 1047 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||| || ||||| || | |||||||||||||| ||| | || |||||| Sbjct 1046 GTCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTT 987 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| | ||| | || | | ||||||||| | ||||| || | |||||| Sbjct 986 GTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCGAGCGTGAT 927 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||||||||||||||| || || || ||||||||||| || Sbjct 926 GGTTTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 888 >seq22358 Length=3586 Score = 168 bits (186), Expect = 8e-37 Identities = 181/237 (76%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| |||| | ||||| |||| |||| || |||||||||||| |||||||| || Sbjct 3327 GCCGCCTCGCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCGA 3268 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG-GCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| || ||||||||||| ||||| || | |||||||||||||| || Sbjct 3267 GAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCG 3208 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| |||||| | ||| | || | | |||||||| | || | Sbjct 3207 GGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATGGTGTCGCTGGGCTCGA 3148 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGCAC 46600 |||| | |||||||| ||||||||||| || || || ||||||||||| || |||| Sbjct 3147 CATCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTTCGCAC 3091 >seq5368 Length=5397 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||||||||| || || | ||||||||||| | || | || ||||||| Sbjct 2603 TCCTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 2662 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||||| || | || | | |||||||| | |||||||| | |||||| Sbjct 2663 TCCTGGATCTTCTGTTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGATG 2722 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || ||||||||||| || || || ||||||||||| || Sbjct 2723 GTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 2760 >seq10165 Length=1505 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46472 TGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTG 46531 |||||||| | || | || ||||||||| |||||||| ||| | || | | |||| Sbjct 4 TGCTGGTCAGGGGGTATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTG 63 Query 46532 TCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGC 46591 ||||||| ||||| |||| ||||||||| |||||||||||||| || || ||||| ||| Sbjct 64 TCGCTCGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGC 123 Query 46592 AT 46593 || Sbjct 124 AT 125 >seq21338 Length=400 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | | |||||| ||| || | ||| | || ||| | Sbjct 196 CTCCTTCTGGATTTTGTAGTCCGCGACTGTGCGCGTGTCCTCCACCTGTTCACCCGCGTA 255 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| || |||| ||| | || ||||||| | |||| || ||| | || Sbjct 256 AATGAGCCGCTGTTGATCGGGCGGGATGCCCTCCTTGACTTCAATCTCCTGCTTCAAAGT 315 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| | || | || || || ||||||||||| ||||||||||| || Sbjct 316 CCAGATGGTGTCGGAAGGATCGATATTGACTGTAATGGTTTTGCCAGTCAGCGTTTTGAC 375 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 376 GAAGATCTGCAT 387 >seq5489 Length=6948 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||||||||| || | || | |||||||| | ||||| | || ||||||| Sbjct 991 CCTTCTGGATATTGTATTCCCAGAGCATACGCTCGTCCTTCAGCTGTTCTCCAGCGAATA 932 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 | | ||||||| | | ||| ||| ||||||||||| || | ||| ||| | ||| Sbjct 931 TGAGGCGCTGCACTTTGCGCGGGACGTTCTCCTTGTCCTGGACCATCTGCTTTACGCTCG 872 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCG 46553 | | ||||||| || ||| |||||| || Sbjct 871 CGATCGTGTCGGTCAGCTCCGCATCCAGCG 842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565070305165320