Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq22358 185 9e-42 seq13286 176 5e-39 seq21338 111 2e-19 seq13862 98.7 1e-15 >seq22358 Length=3586 Score = 185 bits (204), Expect = 9e-42 Identities = 181/232 (78%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| ||||| || || || |||||||| ||||||||| |||| |||||| || Sbjct 3096 AAGATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGATGTCGAGCCC 3155 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | ||||| | | | | | || |||| |||| ||||| ||||| || || ||||| Sbjct 3156 AGCGACACCATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGAC 3215 Query 38361 CAACAGCGGCTCATTTACGCGGG-CAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| ||||| | |||||| ||| |||||||| |||| ||||| ||| ||||| Sbjct 3216 CAGCAGCGCCTCATCTTCGCGGGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTA 3275 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||||||| | || ||||| ||||| |||||| || |||||||| Sbjct 3276 CAACATCCAAAAGGAGTCCACCCTGCACTTGGTCCTGCGTCTGCGAGGCGGC 3327 >seq13286 Length=1322 Score = 176 bits (194), Expect = 5e-39 Identities = 179/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| ||||| || || || ||||||||||||||||| ||||||| ||| || Sbjct 888 AAGATGCAAATCTTCGTCAAGACCCTGACGGGCAAAACCATCACGCTCGACGTGGAGCCC 947 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | | |||| | || |||| |||| ||||| ||||| || || |||| Sbjct 948 AGCGACACGATCGAGAACG-TGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGA 1006 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| ||||| | |||||| || |||||||| |||| |||||| || ||||| Sbjct 1007 CCAGCAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGACGGGCGCACGCTTTCGGACTA 1066 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| | || ||||| |||||| ||||| || | ||||| Sbjct 1067 CAACATCCAGAAGGAGTCCACCCTGCACTTGGTGTTGCGTCTGCGTGGCGG 1117 >seq21338 Length=400 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| |||||||| || ||||||||||| || ||| | |||| | || Sbjct 387 ATGCAGATCTTCGTCAAAACGCTGACTGGCAAAACCATTACAGTCAATATCGATCCTTCC 328 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | || | || | | || | ||| ||||| || || |||| ||| Sbjct 327 GACACCATCTGGACTTTGAAGCAGGAGATTGAAGTCAAGGAGGGCATCCCGCCCGATCAA 268 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 |||||||||||||||||||| ||||| |||| ||| |||||| || |||||||| Sbjct 267 CAGCGGCTCATTTACGCGGGTGAACAGGTGGAGGACACGCGCACAGTCGCGGACTACAAA 208 Query 38424 ATCCAAAAGGA 38434 ||||| ||||| Sbjct 207 ATCCAGAAGGA 197 >seq13862 Length=727 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 133009 AAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG 133068 ||||||| |||||||||||||| || || | ||| ||||| |||| | ||| | || Sbjct 379 AAGAAGATCCCCTCGACGGCCGCAAAGGCAATCAGCCGCTCAGCGAAGGAGGCATACTTC 438 Query 133069 CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATG 133128 ||| | ||| || || ||||| | ||||| | ||| || || | ||| ||||| Sbjct 439 CTGTCACACCACCGGAGGGCCCACTGCGCCTTGCGTCGGACACAGGGGACCGTGTCGATA 498 Query 133129 GCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAA 133188 || || | | | | ||||||| | | | |||||||||||||||| || Sbjct 499 GCATTGAGGAGCTTGTGCTTCTCTTGCCCGTTCTTGATGTAGGTGTCGATGAGGAGGGAG 558 Query 133189 TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTC 133247 || | || ||| | |||||| || ||||| ||||||||||| ||||| || ||||| Sbjct 559 TAGACCTCGCTGTGGATGTTCTCGATAGCGATCTGAAAGCCGTAGAAGCAGCGGGCCTC 617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500024054861440