Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq54 136 2e-26 >seq54 Length=8408 Score = 136 bits (150), Expect = 2e-26 Identities = 268/391 (69%), Gaps = 13/391 (3%) Strand=Plus/Minus Query 451231 TAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACA-G 451289 |||| ||||| |||||||||||| |||||| || |||| ||||| || | | | Sbjct 2078 TAAATCTTTTAGTCCTGAAGAAATATCATCTCAAGT-CTTAAGAAAATTAACTGATGACG 2020 Query 451290 CAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCA 451349 || ||| | | | | || || | ||||| ||||| || || || ||||| | Sbjct 2019 CAAGTAAATTTTTAAATGAAACGGTAACAAAGGCAGTTATTACAGTACCTGCCTATTTTA 1960 Query 451350 ATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTC 451409 | || | ||||| ||||| || ||||| ||||| | || || |||||| | ||| | | Sbjct 1959 ACGACTCTCAACGACAAGCGACAAAAGACGCAGGTAAGATCGCCGGTTTAGAGGTTTTAC 1900 Query 451410 GAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAA 451469 | ||||||||||| || |||||||| || || || ||||| ||| || |||| Sbjct 1899 GTATTATTAATGAGCCAACAGCAGCAGCACTTGCTTATGGTTTAG----ATAAAAA---- 1848 Query 451470 CAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTAC 451529 || | | ||| || ||| | ||||| || ||||| || || ||| ||| | | Sbjct 1847 -AGCAAATGAAACGATATTAATTTTTGACTTAGGTGGTGGTACATTTGACGTTTCAAT-C 1790 Query 451530 TTTCAA-TTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGA 451588 || || ||| ||| || ||||| |||||| ||||| |||||||| |||| |||| Sbjct 1789 TTAGAAGTTGGAGACGGCGTATTCGAAGTATTAGCAACTGCTGGTGATAGTCATTTAGGT 1730 Query 451589 GGTGAAGATATTGATAATGCAATTGTGGAAT 451619 || || ||| ||||| |||||| || ||| Sbjct 1729 GGAGATGATTTTGATTCCGCAATTATGAAAT 1699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975116157195428