Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3508 185 1e-41 seq673 129 7e-25 seq54 127 3e-24 >seq3508 Length=3998 Score = 185 bits (204), Expect = 1e-41 Identities = 361/532 (68%), Gaps = 6/532 (1%) Strand=Plus/Plus Query 7545 ACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGA 7604 || |||| || |||| ||| || ||||| ||| || | ||| || | || ||| || | Sbjct 377 ACATACCTCCGCCCAAGTCGAAGATGAGCACGGTCTTCTCGGCGCCCTT---CTTGTCCA 433 Query 7605 GACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAG 7664 | ||||| || || || || || || || || || || ||||| || ||||| ||| | Sbjct 434 GGCCGTAGGCAATGGCGGCGGCGGTGGGCTCGTTGATGATACGGAGGACGTTCAAGCCCG 493 Query 7665 CAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCG 7724 | || | | ||||| || || || ||||| || || ||||| |||||||| || || | Sbjct 494 CGATGGCACCGGCATCCTTGGTGGCCTGTCGCTGGGAGTCGTTGAAGTAGGCGGGCACGG 553 Query 7725 TTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGG 7784 | | ||| |||| | | || | ||| ||||| || | || || || || ||| ||| Sbjct 554 TGATGACGGCGTTCTTCACCTCCTTGCCGAGGTAGGCCTCAGCAATCTCGCGCATCTTGA 613 Query 7785 TAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAA 7844 | | ||||| || |||||||| || | |||||| || || || || || || | | Sbjct 614 TCAACACCATGGAGGAAATCTCCTCGGGGGCAAACGTCTTGGTCTCGCCCTTGAAGTTCA 673 Query 7845 CTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATAT 7904 ||| || | ||| || | | | || ||| || | | | ||| | ||||| | Sbjct 674 CTTGGATGAGGGGCTTGCCACCGGGGCCCTGGACCACGGTGAAAGGCCAGTGCTTCATGT 733 Query 7905 CGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTG 7964 || | || || |||| |||||| | ||||| || ||||| || ||||| || | Sbjct 734 CGGCCTGCACGACGGGGTCGGAAAACCGACGGCCGATCAGGCGCTTGGCGTCAAAGACGG 793 Query 7965 TGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTAT 8024 |||| || ||||||||| ||||||||| ||||| || ||||| || || || | Sbjct 794 TGTTGGAGGCGTTCATGGCCACTTGGTTCTTGGCCGCATCGCCGATGAGGCGCTCGGACT 853 Query 8025 TTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGC 8076 | || || || ||||| || ||||| || || || ||||||||||| || Sbjct 854 ---CGGTGAAGGCCACGTAGGAAGGGGTGGTGCGGTTGCCTTGGTCGTTGGC 902 >seq673 Length=1750 Score = 129 bits (142), Expect = 7e-25 Identities = 327/494 (66%), Gaps = 4/494 (1%) Strand=Plus/Minus Query 11280 ATCAAATCTACCGGGGCGTAATAACGCATCGTCGAGTATATCGATACGGTTTGTTGCACC 11339 |||||| | || || | |||||| || || | || || | ||||||||| || | Sbjct 971 ATCAAAACGGCCCGGTCTTAATAAAGCGGAATCTAAAATGTCTACACGGTTTGTAGCTGC 912 Query 11340 TATAACAACAATTTCAGTTTCATTCTCGAAACCATCCATTTCTGTTAATAATTGGTTAAT 11399 || || | || | | | | | || || |||||||| || ||||| | ||||| | Sbjct 911 AATCACGATAACACCGTTGTTAGTTTCAAACCCATCCATCTCAGTTAAAAGCTGGTTTAA 852 Query 11400 TGTTTGTTCACGCTCATCGTTTGCCGCA--AACCCATTCATACTTCTTTTCTTACCAATC 11457 |||||||| || || || || | || ||| | || || || || ||||| Sbjct 851 AGTTTGTTCTCGTTCGTCATTACCACCACCAACGCCGG-ATCCTCTTTGTCG-ACCAACT 794 Query 11458 GCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTGCCAATTCAAATATA 11517 |||||||||||||| || ||||||||||| ||| ||| | || || || | | Sbjct 793 GCATCAATTTCATCAATGAAGATAATACAAGGTGTTTTTGCTTTGGCTCTTTTGAAAAGA 734 Query 11518 TCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACGATGACCCCGAACAC 11577 ||||| | |||| ||| |||| || ||||| | ||| || || ||| | || || Sbjct 733 TCACGAATTCTTGATGCACCTATACCAACAAATAATTCTACAAATTCTGATGCTGAGCAA 674 Query 11578 TGAATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTGTTTTACCTGTA 11637 || |||||||| | |||||||| ||||| ||||| | ||||||||||| Sbjct 673 CTAAAGAAAGGAACTTTTGCCTCACCCGCGATAGCCTTAGCTAATAAAGTTTTACCTGTC 614 Query 11638 CCTGGTTTACCTGTTAATAATGCACCCCTTGGTATTTTAGCACCGGTACCAAAGTACTTT 11697 ||||| ||||| ||||| |||| |||| ||||| ||||| || || | Sbjct 613 CCTGGAGGACCTGATAATAGGACACCTTTTGGAATTTTTGCACCAACACGTGTATAACGT 554 Query 11698 TCTGGCGCCTTGAGAAAATCAACAATTTCTTCGAGCTCATCTTTCGCGCTATCTATACCC 11757 || || ||| | ||| ||||||||||| | ||| ||||| | ||| ||||| Sbjct 553 TCAGGTTTCTTTAAGAAAGTAACAATTTCTTGAAACTCTTCTTTAACTTCATCGATACCA 494 Query 11758 TGAACATCATCAAA 11771 |||||||||||| Sbjct 493 GCAACATCATCAAA 480 >seq54 Length=8408 Score = 127 bits (140), Expect = 3e-24 Identities = 192/272 (71%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 7454 GAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATA 7513 ||||| ||||| || ||||| || || |||| || || || ||| ||||| || | Sbjct 1713 GAATCAAAATCATCTCCACCTAAATGACTATCACCAGCAGTTGCTAATACTTCGAATACG 1772 Query 7514 CCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 || || ||| | ||| | ||||| ||||| ||||||||||| | ||||||||| | | Sbjct 1773 CCGTCTCCAACTTCTAAGATTGAAACGTCAAATGTACCACCACCTAAGTCAAAAATTAAT 1832 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | |||| || | || || ||||| | ||| || || | || || || ||||| Sbjct 1833 A---TCGTTTCATTTGCT---TTTTTATCTAAACCATAAGCAAGTGCTGCTGCTGTTGGC 1886 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 |||||||||||||| | | | | || || || | | || ||||| ||||||||| Sbjct 1887 TCATTAATAATACGTAAAACCTCTAAACCGGCGATCTTACCTGCGTCTTTTGTCGCTTGT 1946 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 ||||| || |||||||| ||||| || || || Sbjct 1947 CGTTGAGAGTCGTTAAAATAGGCAGGTACTGT 1978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634943919444440