Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq7782 168 8e-37 seq2632 123 3e-23 >seq7782 Length=16676 Score = 168 bits (186), Expect = 8e-37 Identities = 427/644 (66%), Gaps = 9/644 (1%) Strand=Plus/Plus Query 111531 GACTACGACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCA-AAGACT 111589 |||| ||||| | || || || |||||||||| ||||| |||||| | |||| | Sbjct 6228 GACTTCGACTACGACTACTTCGGCTTCAAGACCCTGGAGAAGTCCTACCTGCTCAAGA-T 6286 Query 111590 GGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCA 111649 ||| || || | ||||| ||| ||| ||||| ||||||| || || ||||| ||||| Sbjct 6287 GGACGGCATCGTCATGGAGCGCCCCCAGCACATGATCATGCGCGTGGCCATCGGCATCCA 6346 Query 111650 TGGGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCAT 111709 ||| || | || | | | ||||| || || ||||||| | |||| Sbjct 6347 CAAGGAGGACGTCGACGCCGCCATCGAGACCTATAACCTCATGTCCCAAAAGCTCTTCAC 6406 Query 111710 CCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTT 111769 || || || || ||||| |||||||| || || || | || || | ||| || || Sbjct 6407 GCATGCCACTCCCACCCTTTTCAACGCCGGCACCCCCCGCCCGCAGCTATCCTCCTGCTT 6466 Query 111770 CCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGC 111829 ||| | | | |||||||| || ||| ||||||| |||| ||| |||| |||| || Sbjct 6467 CCTCCTCACCATGAAGGAGGACTCCATCGATGGCATCTACGACACCCTCAAGCAATGCGC 6526 Query 111830 CCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAA 111889 | ||||| || | || || || ||||| || |||||| | || | ||| | Sbjct 6527 CGCCATCTCCAAATTCGCCGGCGGGATCGGCGTGTCCATCCACAACATCCGCGCC--CGT 6584 Query 111890 GTCTCGTA--TTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTA 111947 | ||| || | | || | || ||| || | ||||| | || ||||| || || Sbjct 6585 GACTCCTACATCCGCGGCTCGAACGGTACCTCCAACGGTATCGTGCCCATGCTGCGTGTC 6644 Query 111948 TTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCA 112004 || |||| ||| || ||||| || |||| | ||| | |||||||| || |||| Sbjct 6645 TTCAACGACACGGCCCGCTACGTGGACCAGGGGGGGGGAAAGCGCAAGGGCTCCTTCGCC 6704 Query 112005 GTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAA 112064 | || || ||||| |||||||| || ||| | ||||||||||| |||| || || Sbjct 6705 ATTTACCTCGAGCCGTGGCACGCCGACATCTTCGAGTTCCTTGACCTGCGCAAGAATCAC 6764 Query 112065 GGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTC 112124 || | ||| || ||| ||| || || || | || ||||||| || ||| | ||| Sbjct 6765 GGCAACGAGCTGGAGCGAGCCCGTGACCTGTTTTATGCCCTCTGGACGCCTGATTTGTTC 6824 Query 112125 ATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCC 112168 ||| || | || ||| | || | ||||| || ||||| || Sbjct 6825 ATGCAGCGCGTGGAGAACGACGGTGACTGGTCCCTGTTTTGCCC 6868 >seq2632 Length=5999 Score = 123 bits (136), Expect = 3e-23 Identities = 324/487 (67%), Gaps = 28/487 (6%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 ||||| || || || || || ||||| || | ||| |||| ||| |||| || || ||| Sbjct 4381 CGATCGAAACGGCCGGGACGGAGGAGGGCCTGATCCAGGACGTCAGCGCGGTTGGTGGCG 4440 Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 |||||||| | || || | | | || || || ||||| || |||| ||||| || Sbjct 4441 GCGATGACGATGATGCCGGGGTTGCCCTCGAAGCCGTCCATTTCCGTCAGCAGCTGATTC 4500 Query 16005 ATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 16062 | || || || || || || || ||| || | ||| |||| || || |||| Sbjct 4501 AAGGTCTGCTCACGCTCGTCGTTTCCGCCCGCGAA--ACCCGCACCACGCTGGCGACCCA 4558 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATG----GTTGATTTTCGCGAGCGACTTCA 16118 | || || |||||||| ||||| | |||||| | ||| | || || || || Sbjct 4559 CCGCGTCGATCTCATCGATGAAAATGATGCAAGGCGCGTTCTTCTTGGCCTGC----TCG 4614 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGT------TT 16172 || | || || |||||| || |||||||| |||||||||||||| || | Sbjct 4615 AACATGTCACGCACACGCGACGCACCCACACCCACAAACATCTCCACGAACTCGGACCCG 4674 Query 16173 GCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232 || |||||| ||||| || ||| ||| ||||| || | ||| ||| || || Sbjct 4675 GCCGCGGAA------ATGAAAGGCACACCAGACTCACCTGCCACGGCCTTGGCCAGCAGC 4728 Query 16233 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACT 16291 |||||||| ||||| || || | |||| |||| || ||||||||||| || || Sbjct 4729 GTCTTACCGGTACCGGGGGGCCCGTCCAGGATCACACCGCGAGGAATCTTGGCACCGACA 4788 Query 16292 TCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCT-CTTCCAATTCATCTTTGG 16350 | ||| |||| || | ||| || || ||||| | || | || | |||| |||| Sbjct 4789 T-TGGTGTACTTCTCGGGGTTCTTGAGGAAGTCCACCACCTCCGTCAGCTCCATC-TTGG 4846 Query 16351 CGGCGTC 16357 || |||| Sbjct 4847 CGCCGTC 4853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620557798969520