Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2632 176 5e-39 seq7782 111 2e-19 >seq2632 Length=5999 Score = 176 bits (194), Expect = 5e-39 Identities = 328/478 (69%), Gaps = 8/478 (2%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 ||||||||||| || || ||||| || || | ||| || | || | ||||| || ||| Sbjct 4381 CGATCGAAACGGCCGGGACGGAGGAGGGCCTGATCCAGGACGTCAGCGCGGTTGGTGGCG 4440 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || ||||| | ||||| | | ||||| ||||||||||| || || ||||| || Sbjct 4441 GCGATGACGATGATGCCGGGGTTGCCCTCGAAGCCGTCCATTTCCGTCAGCAGCTGATTC 4500 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTACCGACA 11682 | ||||| |||||||| ||||| | | ||| || ||||| ||| || Sbjct 4501 AAGGTCTGCTCACGCTCGTCGTTTCCGCCCGCGAAACCCGCACCACGCTGGCGACCCACC 4560 Query 11683 GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGT 11742 ||||| |||||||||||||| | ||| || || ||| ||||| ||||| | Sbjct 4561 GCGTCGATCTCATCGATGAAAATGATGCAAGGCGCGTTCTTCTTGGCCTGCTCGAACATG 4620 Query 11743 TCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG---CGGCAGAA 11799 ||||| |||||| ||| || ||||| || |||||||| ||||| | | |||| | Sbjct 4621 TCACGCACACGCGACGCACCCACACCCACAAACATCTCCACGAACTCGGACCCGGCCGCG 4680 Query 11800 CACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCC 11859 | |||||| || ||| ||||||||| || | ||| || || || |||||||| Sbjct 4681 GA---AATGAAAGGCACACCAGACTCACCTGCCACGGCCTTGGCCAGCAGCGTCTTACCG 4737 Query 11860 GTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC-ACTTCCAAAGTA 11918 ||||| || | || | || | | || || || ||||||||||| || | ||| Sbjct 4738 GTACCGGGGGGCCCGTCCAGGATCACACCGCGAGGAATCTTGGCACCGACAT-TGGTGTA 4796 Query 11919 GCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCG 11976 ||| || ||||||||||||||||| | |||| || ||| ||||||| |||| Sbjct 4797 CTTCTCGGGGTTCTTGAGGAAGTCCACCACCTCCGTCAGCTCCATCTTGGCGCCGTCG 4854 >seq7782 Length=16676 Score = 111 bits (122), Expect = 2e-19 Identities = 281/426 (66%), Gaps = 6/426 (1%) Strand=Plus/Minus Query 109407 GCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGA 109466 |||||| || ||||| || || ||||| || |||||| | ||| | ||||| || | Sbjct 8051 GCGAAGGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGAGTAGAAGTGCATGGAGGT 7992 Query 109467 GAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526 ||| | || | || || | ||| | ||| | ||||| ||||| |||| | Sbjct 7991 GAGCTGGGCGGGCGTGGGGTTGGCCAGGTGGATGTTGAGGGACTGGGACTGGCAGATGTA 7932 Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTT 109586 || || || |||||||||||||||| ||||| || | || ||||| || ||||| Sbjct 7931 GGCGCCGCGGTCGGCCGCCATGTCGATGACGCACTTCTGCCGGATCTCCCACACGGTCTT 7872 Query 109587 GTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTT 109646 ||| | | ||||| || ||| ||| | | |||||| | ||||||| || Sbjct 7871 GTAGAGCTCCTTGAGCTCGCGGGGGATGCTGGCCACGTTTTGCACGGAGCCACGG---TT 7815 Query 109647 CACCATGAGATCCTT---CATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAAC 109703 |||||| | || || ||| ||| || || || | || ||| | Sbjct 7814 GCCCATGATCTGGTTGCGCACCTCGGCGTTCCACAGCCCACGCTCGATCAGGTCGCTGAG 7755 Query 109704 AAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGT 109763 || | ||||||||| | | || ||||| || || |||||| ||| ||||| | Sbjct 7754 CAGGTACTTGTTGACGATGGTGAACTCACCCGCTAGCACACGTCGGGAGTACATGTTGGA 7695 Query 109764 CGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCAT 109823 || |||| |||| |||| |||||||||||||| || || |||||||| |||||||| Sbjct 7694 GGTAAAGGGCTCGACTGACTCGTTGTTGCCTAGGATCTGCGCGGTGGAAGCGGTGGGCAT 7635 Query 109824 GGGAGC 109829 ||| || Sbjct 7634 GGGCGC 7629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588800845899800