Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq7782 201 1e-46 seq17508 138 1e-27 seq673 123 3e-23 seq13862 91.5 2e-13 >seq7782 Length=16676 Score = 201 bits (222), Expect = 1e-46 Identities = 589/899 (66%), Gaps = 15/899 (2%) Strand=Plus/Minus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 |||||||| | || || || || | |||||| ||| ||| ||||| ||||| ||| Sbjct 7117 GTGTACTCGATGATCTCCGTGCAAAGGTTGGAGGACTTGATCACCCCCAGATTCTGCTGG 7058 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||| |||||| || ||||| | |||||||||||||| ||||||||| ||| Sbjct 7057 TTCGACTTGAGGTTGCAAGCGTCCTTAAACAGCATGTAGGGCGTGCCCGTCTCCACCTGG 6998 Query 106625 GACTTGAGAATTGCCTTCCACACATCGGCGGC--TGGTACAATGGCGTTGGCCCGTCCCT 106682 || | | | || ||||| | ||| || | | |||| || |||| Sbjct 6997 GAGTCCAACACGGCGAACCACAGCTGTTGGGCCTTGATCACCTTGCGTG---CCTTCCCG 6941 Query 106683 C-CGCCTCGTACTTTGTGTAGAGG-GCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 106740 | | ||||||| |||||| |||| || |||||| || | |||| | | || Sbjct 6940 CTCTTCTCGTACGACTCGTAGAGCTGCTTGAA-CTCCTCCCCGCACACGTCCGCCAAGCC 6882 Query 106741 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 106800 || || | || || || || ||||| | ||| | | ||| || |||| |||||| Sbjct 6881 GGGGCACTCATTGGGGCAAAACAGGGACCAGTCACCGTCGTTCTCCACGCGCTGCATGAA 6822 Query 106801 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 106860 | || || |||| |||| |||| || || | || || |||| || || Sbjct 6821 CAAATCAGGCGTCCAGAGGGCATAAAACAGGTCACGGGCTCGCTCCAGCTCGTTGCCGTG 6762 Query 106861 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 106920 || || | ||||||||||| | ||| || |||||||| ||||| || || | || Sbjct 6761 ATTCTTGCGCAGGTCAAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGC 6702 Query 106921 GATAGATCCCTTTCGA---CGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 106977 || || ||||| || | ||| | || | || ||||| || ||| |||| || || Sbjct 6701 GAAGGAGCCCTTGCGCTTTCCCCCCCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGAC 6642 Query 106978 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATT 107037 || ||||| || | ||||| | || ||| || | || || || || | | Sbjct 6641 ACGCAGCATGGGCACGATACCGTTGGAGGTACCGTTCGAGCCGCGGATGTAGGAGTCACG 6582 Query 107038 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 107097 ||| | | | |||||| || || || || || || | || ||||| || || Sbjct 6581 GGCGCGGATGTTGTGGATGGACACGCCGATCCCGCCGGCGAATTTGGAGATGGCGGCGCA 6522 Query 107098 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCA 107157 | | | || || | ||||| || | ||| ||||||||||| ||| || |||||||| Sbjct 6521 TTGCTTGAGGGTGTCGTAGATGCCATCGATGGAGTCCTCCTTCATGGTGAGGAGGAAGCA 6462 Query 107158 ACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 107217 ||| | |||||| | || || || || ||||| ||||| || || || || |||| Sbjct 6461 GGAGGATAGCTGCGGGCGGGGGGTGCCGGCGTTGAAAAGGGTGGGAGTGGCATGCGTGAA 6402 Query 107218 CATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGAT 107277 | ||||||||| || || ||||| | | | | || | ||| ||| |||||| Sbjct 6401 GAGCTTTTGGGACATGAGGTTATAGGTCTCGATGGCGGCGTCGACGTCCTCCTTGTGGAT 6342 Query 107278 GCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCG 107337 |||||||||||| ||||| | ||||| ||||| ||||||| |||||| || | | Sbjct 6341 GCCGATGGCCACGCGCATGATCATGTGCTGGGGGCGCTCCATGACGATGCCGTCCATC-- 6284 Query 107338 TTGA--AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 |||| || ||| |||||| ||||| |||| || ||||| | | || ||||||| Sbjct 6283 TTGAGCAGGTAGGACTTCTCCAGGGTCTTGAAGCCGAAGTAGTCGTAGTCGAAGTCCCG 6225 >seq17508 Length=3941 Score = 138 bits (152), Expect = 1e-27 Identities = 369/558 (66%), Gaps = 7/558 (1%) Strand=Plus/Minus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||| |||| || ||| ||| || |||||||| || |||||| ||| ||| || Sbjct 2988 ACAAACTTAGGCAGGACGACCGAAGCCAAATTACACACAGCCACCTCCTCCGGGCTCGTA 2929 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 |||| | ||| || ||||||||||| ||||| ||||||||| | ||||| |||||| Sbjct 2928 TACTGGATAATCTCCGTACACAAGTTCGAACTGCGAATCGTCCCTAGATTCTGCTGGTTA 2869 Query 106568 CTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAC 106627 ||||| || ||||| || || || ||||| || ||||| |||||||| ||||||| Sbjct 2868 CTCTTCAGATTACACGCGTCTTTATAAAGCATATACGGCGTGCCCGTCTCGATCTGTGAG 2809 Query 106628 TTGAGAATTGCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCC 106687 | | ||| || ||||| || || | || | ||| | | |||| | Sbjct 2808 TCCAAAATCGCGAACCACAGGTCTTGCGCACGCACGGTTTTCTTGACTCTTCCCGCTTTT 2749 Query 106688 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGC 106746 || || | ||| ||||| || ||| ||| ||| || |||| | || || || Sbjct 2748 TCATATTGCAGGTACAGGGCCTCGAACGCCT-TGCCATGGCAGTCGCCCAAGCCAGG-GC 2691 Query 106747 CTTG-TCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGT 106805 ||| || ||||| | | ||||| ||| ||||||| |||| |||||| || | | Sbjct 2690 ATTGATCGGGACACATCAACGACCACACCCCATCCTCCTCCACCCTCTTCATAAACAAAT 2631 Query 106806 CTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGA 106865 | || |||||||| | || ||||| | ||| |||||||| | || || || Sbjct 2630 CAGGGATCCACAGCCCATAGAACAGATCACGCGCCCGCGCCTCTTCCTTCCCATGATTTT 2571 Query 106866 GTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 106925 | || ||||| | ||| | |||||||| ||||| ||||||| || | || | | Sbjct 2570 TCCTCAAGTCAAGCACCTCAAAAATATCCGCATGCCACGGCTCAATGTAAATCGCAAAGG 2511 Query 106926 ATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 106982 ||| || | ||| | |||| ||||| ||||| || ||| ||| || || | Sbjct 2510 CCCCCGGCCGCTTCCCCCCGCCCTGATCAACATATCGCGCCGTCACGTCAAACACACGCA 2451 Query 106983 GCATTGGAATAATACCAT 107000 |||| || | | ||||| Sbjct 2450 GCATCGGCACTAAACCAT 2433 >seq673 Length=1750 Score = 123 bits (136), Expect = 3e-23 Identities = 301/455 (66%), Gaps = 12/455 (3%) Strand=Plus/Minus Query 9231 ATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCC 9290 || || || || || || || || || || | || ||| | | | | ||||| |||||| Sbjct 934 ATGTCTACACGGTTTGTAGCTGCAATCACGATAACACCGTTGTTAGTTTCAAACCCATCC 875 Query 9291 ATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCA 9350 ||||| || ||||| ||||| | ||||||||| ||||| ||||| | ||||||| Sbjct 874 ATCTCAGTTAAAAGCTGGTTTAAAGTTTGTTCTCGTTCGTCATTACC------ACCACCA 821 Query 9351 GCACTGCGTTG-CTTT-----CCCACGGCATCAATCTCATCAATGAAGACAATACATGGT 9404 | | | | |||| || || |||||||| ||||||||||||| |||||| ||| Sbjct 820 ACGCCGGATCCTCTTTGTCGACCAACTGCATCAATTTCATCAATGAAGATAATACAAGGT 761 Query 9405 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAAC 9464 ||| | ||| ||| || ||||| |||| ||| || || | ||||||||| Sbjct 760 GTTTTTGCTTTGGCTCTTTTGAAAAGATCACGAATTCTTGATGCACCTATACCAACAAAT 701 Query 9465 ATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATG 9524 | || ||||| | || || || || | ||| || || || | |||||||| || Sbjct 700 AATTCTACAAATTCTGATGCTGAGCAACTAAAGAAAGGAACTTTTGCCTCACCCGCGATA 641 Query 9525 GCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGA 9584 || || | | ||| ||||| || ||||| ||| | | ||| |||| |||| Sbjct 640 GCCTTAGCTAATAAAGTTTTACCTGTCCCTGGAGGACCTGATAATAGGACACCTTTTGGA 581 Query 9585 ATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCC 9644 || || || ||| | || | ||||||| ||| | ||| ||||| |||| Sbjct 580 ATTTTTGCACCAACACGTGTATAACGTTCAGGTTTCTTTAAGAAAGTAACAATTTCTTGA 521 Query 9645 AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 || || ||||| | | || || || ||||||| Sbjct 520 AACTCTTCTTTAACTTCATCGATACCAGCAACATC 486 >seq13862 Length=727 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| | |||| |||||||||||| |||||| ||| || || || ||||||||| Sbjct 328 GGCATCAACCCCCTCTTCTTCAACCAGAAAATAGAGCAAAACGAGCCACTGAAGAAGATC 387 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAAC 117453 ||||| || |||||| |||| || ||||| ||||||||| | |||| ||||| || Sbjct 388 CCCTCGACGGCCGCAAAGGCAATCAGCCGCTCAGCGAAGGAGGCATACTTCCTGTCACAC 447 Query 117454 CATTTCATTGCCCATTTCGCCTT 117476 || | ||||| | |||||| Sbjct 448 CACCGGAGGGCCCACTGCGCCTT 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589805347084840