Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq566 558 4e-154 seq288 416 3e-111 seq620 178 2e-39 seq49 159 4e-34 >seq566 Length=2184 Score = 558 bits (618), Expect = 4e-154 Identities = 738/1016 (73%), Gaps = 6/1016 (1%) Strand=Plus/Plus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 |||||| | | ||||||||| | ||||| || || || || ||| | || ||||| || Sbjct 592 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGC 651 Query 181484 CTACTTCTTTTTCCCA-CTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTT 181542 || || || |||||| | || | ||||||| |||| || ||| | || || || ||||| Sbjct 652 CTT-TTATTATTCCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTT 710 Query 181543 TGTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTG-AGGGTGCTAATTTCC 181601 |||||| || ||||| || || ||||| || ||||| ||||| | ||| ||| || ||| Sbjct 711 TGTTACATCTTGGTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGC-AACTTCT 769 Query 181602 TTACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGG 181661 | || | || || ||||| ||||| || |||||||||||| | || || | |||| Sbjct 770 TAACTGTAGCGGTATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGG 829 Query 181662 GTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTG 181721 | |||||||| || || |||||| || ||| | ||| |||| ||| | ||||||||| Sbjct 830 GACCTGAAGCACAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTA 889 Query 181722 TGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCA-GGCAATTTGAACTTGCT 181780 | || | || || || || | | | || || || || | | | ||||| || | ||| Sbjct 890 TCGCATTACATGGTGCATTTGGTTTAATTGG-ATTCTGTTTACGTCAATTCGAGATCGCT 948 Query 181781 CGTCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTC 181840 ||||| | || || || || || || || ||||| || || || |||||||| |||||| Sbjct 949 CGTCTTGTAGGTATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTC 1008 Query 181841 GTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTC 181900 || |||||||| | ||||||||||| |||||| | ||||||||||| || || ||||| Sbjct 1009 GTTTCTGTATTCTTAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTT 1068 Query 181901 GGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTC 181960 || || || || |||||||||||| | | ||| | || || || ||||| ||||| || Sbjct 1069 GGGGTTGCAGCTATTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTT 1128 Query 181961 AATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATT 182020 || || |||||||||||||| || || || || | ||||| |||||| | ||||||||| Sbjct 1129 AACCCATTCCATATGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATT 1188 Query 182021 CACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAA 182080 || || | || || || || || || | | |||| ||||| ||||| || ||| Sbjct 1189 CATGGAGCTACTGTAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGT 1248 Query 182081 GCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGG 182140 || || |||| ||| ||||||||| ||||||||||| |||||||| | |||||| Sbjct 1249 GCGTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGG 1308 Query 182141 TCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTT 182200 ||||| || |||||| | || || || || | ||| | || ||||| ||| | ||| Sbjct 1309 TCTCAAATTTTCGGTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTT 1368 Query 182201 GTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTT 182260 ||||| || | ||| | ||||||||||| | |||||| | ||| | || | || | Sbjct 1369 GTTCCAGTAACAGGTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTA 1428 Query 182261 CGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACG 182320 | || || ||||| ||||| |||||| | | ||| | ||||| ||||| || || || Sbjct 1429 AGAGCATACGACTTCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACT 1488 Query 182321 TTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGAT 182380 |||||||| || || || | || || |||||| | | ||||| | || || || Sbjct 1489 TTCTACACTAAAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGAC 1548 Query 182381 CAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 ||||||||||| |||||||| ||||| ||||| || ||||| | || ||||| || Sbjct 1549 CAACCACATGAAAACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 1604 >seq288 Length=849 Score = 416 bits (460), Expect = 3e-111 Identities = 415/538 (77%), Gaps = 0/538 (0%) Strand=Plus/Plus Query 179775 AACCGCCTCTATGTCGGTTGGTTCGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACT 179834 ||||| | || ||||||||||||| ||| | ||||| ||||| | || |||| || Sbjct 312 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 371 Query 179835 ATCTGCTTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAA 179894 | |||||||||| |||| || |||||||| || || || || ||||| || ||||||||| Sbjct 372 AGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTATCCGTGAA 431 Query 179895 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCT 179954 || || ||||| ||||| | || || |||||||||||| ||||||||||| ||||| | Sbjct 432 CCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACTGGTGCAGTTATTCCTAGT 491 Query 179955 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGG 180014 || ||| | || ||| |||||||||| || | |||||||| || || | ||||||||| Sbjct 492 TCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGG 551 Query 180015 CTGTATAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCC 180074 || || ||||||||||||| ||||||||| || || |||||| | | || | | | Sbjct 552 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGC 611 Query 180075 TACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTA 180134 |||||||| ||||| ||||||||| || || || || ||||| || ||||| | |||| Sbjct 612 TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTA 671 Query 180135 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 180194 || | || |||||||| |||||||||||||| |||||| | || || || |||| ||| Sbjct 672 GCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATCGGACAA 731 Query 180195 GGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTT 180254 ||| |||||||| | ||||| | || |||||||| || ||||||| |||| | || Sbjct 732 GGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTA 791 Query 180255 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTG 180312 ||||||||||| |||||||| || |||||||| ||||| ||| || || || |||| Sbjct 792 TTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 849 >seq620 Length=282 Score = 178 bits (196), Expect = 2e-39 Identities = 199/263 (76%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 180336 GCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAA-ACTGAGTC 180394 || ||||||||||| || || || ||| | | |||||||| |||| || | || Sbjct 23 GCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGAAAC---TGAAGACGGCGTA 79 Query 180395 CCAG--AACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCA 180452 | | |||||||||||||| || || ||||||||||| || ||||||||||| |||||| Sbjct 80 TCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCA 139 Query 180453 CATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTT 180512 || || ||||| || ||| | |||||||| || || ||||||||||| ||| | | Sbjct 140 CACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCTCGTGCTTTA 199 Query 180513 CACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGC 180572 ||||||||| | || || ||||| || || || |||||||| ||||| || || || || Sbjct 200 CACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGT 259 Query 180573 ACCATGGCATTCAACCTCAACGG 180595 || |||||||||||| | || || Sbjct 260 ACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 159 bits (176), Expect = 4e-34 Identities = 161/207 (78%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 180567 GTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGT 180626 || || || |||||||||||| | || ||||||||||||||||| || | ||||| | Sbjct 2146 GTTAGTACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGC 2087 Query 180627 CAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAA 180686 ||||| || ||| ||||||||||||| ||| | ||||||| |||| | | ||||||||| Sbjct 2086 CAAGGCCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAA 2027 Query 180687 GTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCTGCTGA-GTCCAC 180745 || |||||||| ||||| || ||||||||||| || || | || | || | || | Sbjct 2026 GTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGCCGTATCTAATGTTC-T 1968 Query 180746 TCCTGTTGCACTCACCGCTCCTTCTGT 180772 |||||||||| | | ||||||| |||| Sbjct 1967 TCCTGTTGCATTAAACGCTCCTGCTGT 1941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610215275621640