Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq566 585 3e-162 seq288 379 2e-100 seq620 194 2e-44 seq49 109 6e-19 >seq566 Length=2184 Score = 585 bits (648), Expect = 3e-162 Identities = 764/1051 (73%), Gaps = 27/1051 (3%) Strand=Plus/Plus Query 170519 AAGGGGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGG 170578 ||| |||| ||||| | | || ||||||||||| |||||||||| ||||| || || Sbjct 582 AAGAGGTTTATTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGG 641 Query 170579 ATGGTCTGGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGG 170638 ||||| || |||||| | | || |||| || || | ||||| ||||| ||| Sbjct 642 TTGGTCAGGCCTTTTATTATTCCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGG 701 Query 170639 GACTACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATG 170698 || || || |||||||| |||||||||||||| | || || || || || || ||||| Sbjct 702 TACGACTTTTGTTACATCTTGGTATACACATGGATTAGCATCTTCTTACCTAGAAGGATG 761 Query 170699 TAACTTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTT 170758 |||||| |||| | ||| || || ||||||| || ||||||||| | | || Sbjct 762 CAACTTCTTAACTGTAGCGGTATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTT 821 Query 170759 CCTTTGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATG 170818 | |||||||||||||||||||| || ||||||| | ||| | || || ||||| Sbjct 822 ATTATGGGGACCTGAAGCACAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATG 881 Query 170819 GAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCA-GACAATTTG 170877 | ||| | ||||||||||| | ||||| | || || ||| || | | | ||||| | Sbjct 882 GGCTTTTATCGCATTACATGGTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCG 940 Query 170878 AGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCG 170937 ||||||| | |||||||| || | || || |||||| | |||||||||| ||| | Sbjct 941 AGATCGCTCGTCTTGTAGGTATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTG 1000 Query 170938 CAGTCTTCACTAGCATCTTTCTGATCTATCCACTAGGTC-AGCACAGTTGGTTCTTCGCA 170996 | || ||| | | || | |||||||| ||||| | |||| |||||||||||||| Sbjct 1001 CGGTATTCGTTTCTGTATTCTTAATCTATCCTCTAGGACAAGCA-AGTTGGTTCTTCGCT 1059 Query 170997 CCATCATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAAC 171056 ||| || || || ||||| ||||| || | | |||||| ||||||||||||| ||| Sbjct 1060 CCAAGTTTTGGGGTTGCAGCTATTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAAC 1119 Query 171057 ATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTA 171116 ||| | || ||||| || |||||||| || ||||| || ||||||| ||||||||| Sbjct 1120 TGGACACTTAACCCATTCCATATGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTA 1179 Query 171117 TGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACT 171176 | ||| |||||||| || || || | |||||| | | |||||| | | || || Sbjct 1180 TCTGCAATTCATGGAGCTACTGTAGAAAACACACTATTTGAAGA------TGGTGATGCT 1233 Query 171177 GATAATAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACT 171236 | |||| ||||||||||| ||| || ||||| |||||||||| Sbjct 1234 G-----------CAAA----CACATTCCGTGCGTTTACACCAACACAATCAGAAGAAACT 1278 Query 171237 TACAGTATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAAC 171296 || ||| | ||||| || ||||||||||| || || || ||| | |||||||||||| Sbjct 1279 TATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTCGGTGTAGCTTTCTCTAAC 1338 Query 171297 AAAAGATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCT 171356 ||| | | | |||||| | ||||| || ||||| || | ||| | |||||| ||| Sbjct 1339 AAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAACAGGTTTATGGACAAGTTCT 1398 Query 171357 ATAGGTATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATA 171416 | ||||| |||||| ||||| | || | ||||||||||| || ||||||||||| | Sbjct 1399 TTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACGACTTCGTATCTCAAGAACTT 1458 Query 171417 AGAGCAGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTT-AATGA 171475 | ||||| ||||| ||||| || || |||||||||||||| ||||| ||| || || || Sbjct 1459 CGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAATAT-CTTATTAAACGA 1517 Query 171476 AGGTATGAGAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGA 171535 |||||| ||| |||||||| | || |||||||||||||| ||||| ||||||||||| Sbjct 1518 AGGTATTAGATCATGGATGGCCGCACAAGACCAACCACATGAAAACTTTGTATTCCCAGA 1577 Query 171536 AGAAGTGTTACCAAGAGGTAACGCACTTTAA 171566 || || |||||| | || ||||| |||||| Sbjct 1578 GGAGGTTTTACCACGTGGAAACGCCCTTTAA 1608 >seq288 Length=849 Score = 379 bits (420), Expect = 2e-100 Identities = 399/522 (76%), Gaps = 2/522 (0%) Strand=Plus/Plus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCGTT 169503 |||||||| |||||| ||||||| ||| ||| | ||||| || || |||||| | Sbjct 327 GGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATC 386 Query 169504 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCT 169563 || || || || |||||||| || ||||||||||| ||| | |||||||| || || || Sbjct 387 GCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTATCCGTGAACCAGTTGCTGGATCA 446 Query 169564 TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGA 169623 | || || || |||||||||||| ||||||||||| |||| || ||| ||||||| Sbjct 447 CTTTTATACGGAAACAACATCATCACTGGTGCAGTTATTCCTAGTTCTAACTCTATCGGT 506 Query 169624 CTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGT 169683 | |||||||||||| | |||||||| || || | || || ||| | || || |||||| Sbjct 507 ATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGGCTTTACAACGGTGGT 566 Query 169684 CCTTATCAGTTGGTAATCTTCCACTTCCTTATT-GGTATCTCAGCATACATGGGAAGACA 169742 ||||| || | ||| | || ||||| |||||| ||| | | ||||||||| | | Sbjct 567 CCTTACCAACTTGTAGTATTACACTT-CTTATTAGGTGTAGCTTGCTACATGGGACGTGA 625 Query 169743 GTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 169802 |||||||| ||| | ||||| |||||||||||||| | || || | ||| || || Sbjct 626 ATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCC 685 Query 169803 AGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGA 169862 |||| |||| |||| || ||||||||||| |||||| | || || ||| |||||||| Sbjct 686 AGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATCGGACAAGGTAGCTTCTCTGA 745 Query 169863 TGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCA 169922 ||||||||| ||||||| || |||||||||||||| ||||| || ||||||||||| || Sbjct 746 TGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACA 805 Query 169923 TAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGG 169964 |||||||| ||||| || ||||| ||||| || || || || Sbjct 806 CAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGG 847 >seq620 Length=282 Score = 194 bits (214), Expect = 2e-44 Identities = 212/282 (75%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 169968 GTTCGGAGGATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAG 170027 ||| || || ||||||||| || ||||| ||||| ||||| || || | ||||| | Sbjct 1 GTTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCG 60 Query 170028 AGAAACAACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAAC 170087 ||||| ||| | || ||||| ||||| || |||||||||||||||||||| Sbjct 61 TGAAACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAAC 120 Query 170088 ATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATT 170147 |||||||| ||||| ||||||||||||||||| ||| | |||||||| || || || Sbjct 121 TTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTT 180 Query 170148 CAACAACTCAAGAAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTT 170207 ||||||||| | | ||||||||||| |||| | || || |||||| || | ||||| Sbjct 181 CAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTT 240 Query 170208 AACCTCTATGGGTATCTGCACAATGGCATTCAACTTGAATGG 170249 ||| || | ||| | | || |||||||||||||| ||||| Sbjct 241 AACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 109 bits (120), Expect = 6e-19 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 170227 ACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGAT-GCTAACGG 170285 || |||||||||||||| |||||||||||||| |||||||| ||||||||| || || || Sbjct 2140 ACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAA-GG 2082 Query 170286 AAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTAT 170345 | || || |||| ||| || | ||| | || | || ||||||||||| || Sbjct 2081 CCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAAT 2022 Query 170346 GCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 ||| ||| | || || ||||||||||| ||||| |||| Sbjct 2021 GCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGC 1983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579040549353440