Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq566 572 2e-158 seq288 416 3e-111 seq620 203 4e-47 seq49 132 6e-26 >seq566 Length=2184 Score = 572 bits (634), Expect = 2e-158 Identities = 733/1005 (73%), Gaps = 4/1005 (0%) Strand=Plus/Plus Query 169317 TCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGTCTACTTCTTC 169376 ||||||||||| | ||||| || || || ||||| ||||||||||| || || || || Sbjct 602 TCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGCCT-TTTATTA 660 Query 169377 TTCCC-ACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCC 169435 ||||| || || | |||||| |||| || ||| | || ||||| | |||||||| || Sbjct 661 TTCCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCT 720 Query 169436 TGGTACACCCACGGACTCGCTTCCAGTTACTTAGAAGGCGCTAACTTCCTCACTGCTGCT 169495 ||||| || || ||| | || || |||| ||||||| |||||| | |||| || Sbjct 721 TGGTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGCAACTTCTTAACTGTAGCG 780 Query 169496 GTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCA 169555 || |||||||| || |||||| || || | | || ||||||| || |||||| Sbjct 781 GTATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGGGACCTGAAGCA 840 Query 169556 CAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCAT 169615 ||||| |||||| ||| ||| |||| | ||||| | ||| ||| | ||| | ||| Sbjct 841 CAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATCGCATTACAT 900 Query 169616 GGTGCATTTGCATTGATTGGTTTCATGCTTA-GGCAGTTTGAATTGGCACGTCTTATTGG 169674 |||||||||| || ||||| ||| || ||| | || || || | || |||||| | || Sbjct 901 GGTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGG 959 Query 169675 CATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTT 169734 || ||||| ||||| || |||||||||||||| |||||||| ||||| || ||| || Sbjct 960 TATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTCGTTTCTGTATT 1019 Query 169735 TCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGC 169794 | ||||| || || ||||| | |||||||| ||||| ||||| || |||| Sbjct 1020 CTTAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGC 1079 Query 169795 AATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCA 169854 || ||| | ||| | || ||| | ||||| ||||| |||||||| | || |||||||| Sbjct 1080 TATTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAACCCATTCCA 1139 Query 169855 CATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTAC 169914 |||||||| |||||||| || || || || ||||| | ||||| || ||||| | ||| Sbjct 1140 TATGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATTCATGGAGCTAC 1199 Query 169915 AGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTC 169974 ||||| |||||| | | |||||| ||||| ||||| || ||| |||||| | Sbjct 1200 TGTAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACC 1259 Query 169975 GACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 170034 ||||| |||||| |||||||| ||||| || || || | |||||||| || || || Sbjct 1260 AACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTTT 1319 Query 170035 CGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTAT 170094 |||| | || || |||||||| ||||||||||| || |||||||| ||||| || || | Sbjct 1320 CGGTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAAC 1379 Query 170095 GGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGA 170154 ||| | |||||| ||| |||| ||| | || | || | ||| | | || ||||| Sbjct 1380 AGGTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACGA 1439 Query 170155 TTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAA 170214 ||||| ||| || | | ||||| ||||||||||||||||| || |||||||| || Sbjct 1440 CTTCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTAA 1499 Query 170215 AAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGA 170274 ||| ||| |||| || ||||| || | ||||| |||| | || ||||||||||| Sbjct 1500 AAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGACCAACCACATGA 1559 Query 170275 AAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 |||||| | |||||||| || ||| | || | || ||||| || Sbjct 1560 AAACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 1604 >seq288 Length=849 Score = 416 bits (460), Expect = 3e-111 Identities = 417/538 (78%), Gaps = 4/538 (1%) Strand=Plus/Plus Query 167890 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 167949 ||||| | || ||||||||||||| || | ||||| ||||| | || |||| || Sbjct 312 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 371 Query 167950 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 168009 | ||| |||||| |||| || ||||||| || || || || |||||||| ||||||||| Sbjct 372 AGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTATCCGTGAA 431 Query 168010 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTCT 168069 || || ||||| ||||| | || || |||||||||||| ||||||||||| | ||| | Sbjct 432 CCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACTGGTGCAGTTATTCCTAGT 491 Query 168070 TCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGG 168129 ||||| |||| || |||||||||| || | |||||||| || || | || |||||| Sbjct 492 TCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGG 551 Query 168130 TTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCG--GTATCTATG 168187 | || ||||||||||||| |||||| ||||| || |||||| | | | ||| || || Sbjct 552 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 610 Query 168188 CATACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTG 168247 | |||||||||||||||||||||||| || |||||||| |||||||| ||||| | | Sbjct 611 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 669 Query 168248 TTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTC 168307 | || | ||| || ||||| |||||||| |||||||||| |||| || || |||| | Sbjct 670 TAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATCGGAC 729 Query 168308 AAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGG 168367 ||||||| |||||||||| ||||| | || || || || || ||||||| |||||| | Sbjct 730 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAG 789 Query 168368 TCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGG 168425 | |||||||| || ||||| ||||| ||||| || ||||||||| || |||||||| Sbjct 790 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGG 847 >seq620 Length=282 Score = 203 bits (224), Expect = 4e-47 Identities = 217/284 (76%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 168430 TTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGA 168489 |||||||| ||| || |||||||||||||| | | || || ||| | | | | Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 168490 GAGACGACTGAA-AC--CGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAA 168546 || || |||| || || ||| |||||||||||||| |||||||||||||||||| Sbjct 62 GAAAC---TGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAA 118 Query 168547 ACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 168606 || |||||||||||||| || || |||||||| || ||||| |||||||||||||| Sbjct 119 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGT 178 Query 168607 TTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 168666 ||||||||||| || | || ||||||||| | ||||| ||||| ||||| || |||||| Sbjct 179 TTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 238 Query 168667 TTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGG 168710 || || || ||||| || || |||||||||||| | || || Sbjct 239 TTAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 132 bits (146), Expect = 6e-26 Identities = 121/153 (79%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 168688 ACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 168747 || |||||||||||| | || ||||||||||||||||| || | ||||| | || || Sbjct 2140 ACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAAGGC 2081 Query 168748 CGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATG 168807 || ||| | ||||| ||||| || || | ||||| |||| | | ||||||||||| ||| Sbjct 2080 CGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATG 2021 Query 168808 CATGAGCGTAACGCACACAACTTCCCACTCGAT 168840 || || |||||||| ||||||||||| || ||| Sbjct 2020 CACGAACGTAACGCGCACAACTTCCCTCTAGAT 1988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574302758732280