Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq566 558 4e-154 seq288 405 6e-108 seq620 221 1e-52 seq49 154 2e-32 >seq566 Length=2184 Score = 558 bits (618), Expect = 4e-154 Identities = 732/1006 (73%), Gaps = 6/1006 (1%) Strand=Plus/Plus Query 165204 TCGATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTT 165263 ||||||||||| | ||||||||||||||||| ||| |||||||||| || ||| || || Sbjct 602 TCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGCCTT-TTATTA 660 Query 165264 TTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGT 165322 ||||| || || | |||||| |||| || ||| | || || || ||||| | || | Sbjct 661 TTCCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCT 720 Query 165323 TGGTATACTCACGGGTTGGCAAGTTCCTATCT-GGAGGGTGCAAACTTTCTTACTGCGGC 165381 |||||||| || || || ||| ||| || || | ||| ||| ||||| | |||| || Sbjct 721 TGGTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGC-AACTTCTTAACTGTAGC 779 Query 165382 AGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGC 165441 || || || || ||| || |||||||||||| | | | | ||||| ||||| || Sbjct 780 GGTATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGGGACCTGAAGC 839 Query 165442 TCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCA 165501 ||||| |||||| | ||| | ||| |||| ||| | ||||||||| | || | || Sbjct 840 ACAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATCGCATTACA 899 Query 165502 CGGGGCTTTCGCTCTAATTGGTTTCATGCTT-CGTCAGTTTGAATTAGCACGTCTCATCG 165560 || || || | | ||||||| ||| || || ||||| || || | || ||||| | | Sbjct 900 TGGTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAG 958 Query 165561 GTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCT 165620 |||| ||||| || || || ||||| |||||||| ||||| || || || ||| || | Sbjct 959 GTATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTCGTTTCTGTAT 1018 Query 165621 TTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAG 165680 | | ||||| ||||| || ||| | |||||||| ||||||||| ||| ||||| |||| Sbjct 1019 TCTTAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAG 1078 Query 165681 CAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTC 165740 | || ||| | ||| | | ||| ||||||| |||||||||||||| | || || || | Sbjct 1079 CTATTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAACCCATTCC 1138 Query 165741 ATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTA 165800 |||||||||| || ||||| || | ||||||||||| | ||||| || ||||| | || Sbjct 1139 ATATGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATTCATGGAGCTA 1198 Query 165801 CAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACT 165860 | ||||| || || || | | |||||||||| | |||||| || ||| || ||| Sbjct 1199 CTGTAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACAC 1258 Query 165861 CTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCT 165920 | || ||| |||||||| || |||||||| || || || | ||||||||||| || | Sbjct 1259 CAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTT 1318 Query 165921 TCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTA 165980 ||||| | || || ||| || | ||| | || ||||| ||| | |||||||| || | Sbjct 1319 TCGGTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAA 1378 Query 165981 TGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATG 166040 ||| | ||||||||||| | |||||| | ||| | || | || | | || || | Sbjct 1379 CAGGTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACG 1438 Query 166041 ACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGA 166100 |||| ||||| ||||| | | ||||| ||||| ||||| |||||||| |||||||| | Sbjct 1439 ACTTCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTA 1498 Query 166101 AAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATG 166160 |||| || | || || |||||| || | | ||| |||| || || ||||| |||| Sbjct 1499 AAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGACCAACCACATG 1558 Query 166161 AGAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 | |||||||| ||||| || || ||| | || | || ||||| || Sbjct 1559 AAAACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 1604 >seq288 Length=849 Score = 405 bits (448), Expect = 6e-108 Identities = 431/565 (76%), Gaps = 4/565 (1%) Strand=Plus/Plus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 |||||| ||| | ||| |||| | ||||| | || | ||||||||||| ||| | Sbjct 285 TTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTA 344 Query 163845 ATGATCCCTACGCTGCTTGCAGCAACCATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 163904 |||||||| || | | |||| || | ||| |||||| |||| || ||||||| || Sbjct 345 ATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTTATCGCTGCACCT 404 Query 163905 CCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACAAC 163964 || || || ||||| ||||| |||||||| ||||| || || || | || || |||||| Sbjct 405 CCAGTTGATATCGACGGTATCCGTGAACCAGTTGCTGGATCACTTTTATACGGAAACAAC 464 Query 163965 ATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCATT 164024 |||||| ||||||||||| |||| || || | || ||| ||||||||||||| || Sbjct 465 ATCATCACTGGTGCAGTTATTCCTAGTTCTAACTCTATCGGTATTCACTTCTACCCAGTT 524 Query 164025 TGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCGTC 164084 |||||||| || || | || || |||||||||||||||||||||| ||||||||| || Sbjct 525 TGGGAAGCTGCGTCTTTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTA 584 Query 164085 TTCCACTTCCTGATCG--GTATCTATGCATACATGGGTCGTGAGTGGGAACTGTCTTACC 164142 || |||||| | | | ||| || ||| |||||||| ||||| |||||||| |||| Sbjct 585 TTACACTTCTTATTAGGTGTAGCT-TGC-TACATGGGACGTGAATGGGAACTTAGCTACC 642 Query 164143 GTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCG 164202 || | || |||||||||||||||| || |||| ||| || || || || |||||||| | Sbjct 643 GTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTG 702 Query 164203 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCA 164262 |||| ||| | || || || |||| |||||| |||||||| | ||||| | || | Sbjct 703 CAGTATTCTTAGTTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTA 762 Query 164263 TCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACC 164322 | ||||| || ||||||| |||||| || ||||||||||| |||||||| || ||||||| Sbjct 763 TTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACC 822 Query 164323 CCTTCCATATGCTCGGCGTTGCTGG 164347 | ||||||||| || |||||||| Sbjct 823 CATTCCATATGGCTGGTGTTGCTGG 847 >seq620 Length=282 Score = 221 bits (244), Expect = 1e-52 Identities = 221/284 (78%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 164352 TTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGT 164411 ||||| || ||| | |||||||| |||||||||||||| || || ||| | | ||| Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 164412 GAAACCACCGAA-ACTGAGTCCCAG--AACTATGGTTACAAGTTTGGTCAAGAAGAAGAA 164468 ||||| ||| || | || | | ||||| |||||||| || || |||||||||||| Sbjct 62 GAAACT---GAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAA 118 Query 164469 ACATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCA 164528 || |||||||| || || || |||||||||||||| ||| | |||||||||||||| Sbjct 119 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGT 178 Query 164529 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGG 164588 ||||||||||| ||| | || ||||||||| | ||||| ||||| ||||| || |||||| Sbjct 179 TTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 238 Query 164589 TTCACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGG 164632 || || || ||||||||| || |||||||||||| | || || Sbjct 239 TTAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 154 bits (170), Expect = 2e-32 Identities = 126/153 (82%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 164610 ACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGT 164669 || |||||||||||| | || ||||||||||||||||| || | | ||| | || || Sbjct 2140 ACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAAGGC 2081 Query 164670 CGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATG 164729 || ||| ||||||||||||| ||| || ||||||| |||| | | ||||||||||| ||| Sbjct 2080 CGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATG 2021 Query 164730 CACGAGCGTAACGCTCACAACTTCCCTCTGGAT 164762 ||||| |||||||| |||||||||||||| ||| Sbjct 2020 CACGAACGTAACGCGCACAACTTCCCTCTAGAT 1988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556759177526040