Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq288 426 2e-114 seq620 197 2e-45 seq49 105 8e-18 >seq288 Length=849 Score = 426 bits (472), Expect = 2e-114 Identities = 435/565 (77%), Gaps = 2/565 (0%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| ||| | || ||||| | ||| | | || | |||||||||||||| ||| Sbjct 285 TTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTA 344 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCA 168610 ||||||||| ||||||||||| || || ||||| | || ||||| |||||||| Sbjct 345 ATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTTATCGCTGCACCT 404 Query 168611 CCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAAC 168670 || || ||||||||||| ||| | ||||| || || || | || | || ||||||||| Sbjct 405 CCAGTTGATATCGACGGTATCCGTGAACCAGTTGCTGGATCACTTTTATACGGAAACAAC 464 Query 168671 ATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATT 168730 |||||| | ||||||||| |||| ||| ||| | |||||| | |||||||||||| || Sbjct 465 ATCATCACTGGTGCAGTTATTCCTAGTTCTAACTCTATCGGTATTCACTTCTACCCAGTT 524 Query 168731 TGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATC 168790 |||||||| || | | || |||||| | || || |||||||||||||| | ||| | Sbjct 525 TGGGAAGCTGCGTCTTTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTA 584 Query 168791 TTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA-TTATCATACAG 168849 || |||||| || | || | || ||||||||| | | |||||| ||| | ||| | Sbjct 585 TTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTTAGC-TACCG 643 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 |||| ||| | |||||||| | || |||| ||||| |||||| ||||||||| ||| Sbjct 644 TTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGC 703 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 ||||||| | || |||||| | || || ||| |||||||||||||||||| |||| || Sbjct 704 AGTATTCTTAGTTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTAT 763 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 |||||| || |||||||||||||| |||||||||||||| ||||||||||||||||| || Sbjct 764 TTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCC 823 Query 169030 CTTCCATATGGCAGGAGTAGCAGGT 169054 ||||||||||| || || || ||| Sbjct 824 ATTCCATATGGCTGGTGTTGCTGGT 848 >seq620 Length=282 Score = 197 bits (218), Expect = 2e-45 Identities = 213/282 (76%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 169057 GTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAG 169116 ||| ||||| ||| ||||| || ||||| ||||| |||||||||||| | ||||| | Sbjct 1 GTTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCG 60 Query 169117 AGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAAC 169176 || ||| || | | |||| ||||| |||||||| ||||| |||||||||||||| Sbjct 61 TGAAACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAAC 120 Query 169177 CTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTT 169236 || || || || || ||||| || ||||| || | ||||||||||| || || ||||| Sbjct 121 TTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTT 180 Query 169237 CAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTT 169296 ||||||||| | | | ||||||||| |||| | | ||||||||| || | ||||| Sbjct 181 CAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTT 240 Query 169297 AACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGG 169338 ||| || | ||| | |||| |||||||||||||| || || Sbjct 241 AACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 105 bits (116), Expect = 8e-18 Identities = 123/163 (75%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 169314 GTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGAT-GTTAAC 169372 |||| |||||||||||||| || || || ||||| |||||||| ||||| ||| | || Sbjct 2142 GTACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAAG 2083 Query 169373 G--GTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAG 169430 | | ||||| || |||| |||| | | ||| | || | | |||||||||| Sbjct 2082 GCCGCGTGATCAACACT---TGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAG 2026 Query 169431 TAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGC 169473 ||||||| || |||||||| ||||||||||| ||||| ||||| Sbjct 2025 TAATGCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGC 1983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564273742123680