Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq566 554 5e-153 seq288 354 1e-92 seq620 208 9e-49 seq49 100 3e-16 >seq566 Length=2184 Score = 554 bits (614), Expect = 5e-153 Identities = 755/1050 (72%), Gaps = 25/1050 (2%) Strand=Plus/Plus Query 172941 AAGAGGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGG 173000 |||||||| ||||| | | || ||||||||||| |||||||||||||||| || || Sbjct 582 AAGAGGTTTATTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGG 641 Query 173001 ATGGTCTGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGG 173060 ||||| || |||||| | | || || | ||| | | ||||| ||||| ||| Sbjct 642 TTGGTCAGGCCTTTTATTATTCCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGG 701 Query 173061 AACTACCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGC 173120 || || || |||||||| |||||||||||||| | |||||||| || || |||||| Sbjct 702 TACGACTTTTGTTACATCTTGGTATACACATGGATTAGCATCTTCTTACCTAGAAGGATG 761 Query 173121 AAACTTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTT 173180 ||||| ||||| | ||| || || ||||||| || ||||||||| | | || Sbjct 762 CAACTTCTTAACTGTAGCGGTATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTT 821 Query 173181 CCTTTGGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATG 173240 | |||||||||||||||||||| ||| |||||| | ||| | || ||| |||| Sbjct 822 ATTATGGGGACCTGAAGCACAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATG 881 Query 173241 GAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGA 173300 | ||| | ||||||||||| | ||||| | || || ||| | ||||| || || Sbjct 882 GGCTTTTATCGCATTACATGGTGCATTTGGTTTAATTGGATTCTGTTTACGTCAATTCGA 941 Query 173301 GATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGC 173360 |||||| | |||||||| || | || || |||||| | |||||||||| ||| || Sbjct 942 GATCGCTCGTCTTGTAGGTATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGC 1001 Query 173361 AGTCTTCACTAGCATCTTTTTAATCTACCCACTAGGGC-AGCACAGTTGGTTCTTCGCAC 173419 || ||| | | || |||||||| || ||||| | |||| |||||||||||||| | Sbjct 1002 GGTATTCGTTTCTGTATTCTTAATCTATCCTCTAGGACAAGCA-AGTTGGTTCTTCGCTC 1060 Query 173420 CTTCATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACA 173479 | || || || ||||| || || || | | |||||| ||||||||||||| ||| Sbjct 1061 CAAGTTTTGGGGTTGCAGCTATTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACT 1120 Query 173480 TTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTAT 173539 ||| | || ||||| || |||||||| || ||||| || ||||||| |||||| ||| Sbjct 1121 GGACACTTAACCCATTCCATATGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTAT 1180 Query 173540 GTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTG 173599 ||| |||||||| || || || | |||||| | | |||||| || Sbjct 1181 CTGCAATTCATGGAGCTACTGTAGAAAACACACTATTTGAAGA---------------TG 1225 Query 173600 AAGGTAAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTT 173659 | | | | ||| | || ||| | || ||| || ||||| ||||||||||| Sbjct 1226 --GTGATGCTGCAAAC----ACATTCCGTGCGTTTACACCAACACAATCAGAAGAAACTT 1279 Query 173660 ATAGTATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACA 173719 || ||| | |||||||| ||||||||||| || || || ||| | || || || |||| Sbjct 1280 ATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTCGGTGTAGCTTTCTCTAACA 1339 Query 173720 AAAGATTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCA 173779 || | | | |||||| ||||||| || || || || | ||| | |||||| || Sbjct 1340 AACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAACAGGTTTATGGACAAGTTCTT 1399 Query 173780 TAGGTATCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAA 173839 | ||||| |||||| | ||| | || | |||||||||||||| ||||||||||| | Sbjct 1400 TTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACGACTTCGTATCTCAAGAACTTC 1459 Query 173840 GAGCAGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTT-AATGAA 173898 | ||||| ||||||||||| || || |||||||||||||| ||||| ||| || || ||| Sbjct 1460 GTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAATAT-CTTATTAAACGAA 1518 Query 173899 GGTATGAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAA 173958 ||||| ||| |||||||| | | ||| ||||||||||| ||||| ||||| ||||| Sbjct 1519 GGTATTAGATCATGGATGGCCGCACAAGACCAACCACATGAAAACTTTGTATTCCCAGAG 1578 Query 173959 GAAGTGTTACCAAGAGGTAACGCACTTTAA 173988 || || |||||| | || ||||| |||||| Sbjct 1579 GAGGTTTTACCACGTGGAAACGCCCTTTAA 1608 >seq288 Length=849 Score = 354 bits (392), Expect = 1e-92 Identities = 391/521 (75%), Gaps = 0/521 (0%) Strand=Plus/Plus Query 171862 GGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTT 171921 |||||||||||||| | ||||||||| || | ||||| || ||||||||| | Sbjct 327 GGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATC 386 Query 171922 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT 171981 || || || || |||||||| || ||||||||||| ||| | ||||||||||| || || Sbjct 387 GCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTATCCGTGAACCAGTTGCTGGATCA 446 Query 171982 TTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGT 172041 | ||||| || |||||||||||| ||||||||||| |||| || ||| | || ||| Sbjct 447 CTTTTATACGGAAACAACATCATCACTGGTGCAGTTATTCCTAGTTCTAACTCTATCGGT 506 Query 172042 CTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGT 172101 | ||||||||||| | |||||||| || | |||| || ||| | ||||| |||||| Sbjct 507 ATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGGCTTTACAACGGTGGT 566 Query 172102 CCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAG 172161 ||||| || | ||| | || |||||| | | ||| | | ||||||||| | | Sbjct 567 CCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAA 626 Query 172162 TGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCT 172221 |||||||| ||| | ||||| ||| | || ||||| | ||||| | ||||| || Sbjct 627 TGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCA 686 Query 172222 GTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGAT 172281 ||| | ||||||| ||| || ||| | || || ||| |||| || ||| ||||||||| Sbjct 687 GTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATCGGACAAGGTAGCTTCTCTGAT 746 Query 172282 GGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCAT 172341 |||||||| ||||||| || ||||| |||||||| ||||| || ||||||||||| || Sbjct 747 GGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACAC 806 Query 172342 AACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGG 172382 |||||||| ||||| || ||||| ||||| || || || || Sbjct 807 AACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGG 847 >seq620 Length=282 Score = 208 bits (230), Expect = 9e-49 Identities = 217/282 (77%), Gaps = 7/282 (2%) Strand=Plus/Plus Query 172386 GTTTGGAGGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAG 172445 |||||| || ||||||||| || |||||||||||| | || |||||| | ||||| | Sbjct 1 GTTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCG 60 Query 172446 AGAGACAACTGAA---GCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGA 172502 || ||||||| | | ||| |||||||| ||||| ||||||||||||||||| Sbjct 61 TGA---AACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGA 117 Query 172503 AACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTC 172562 ||| |||||||| ||||| ||||||||||||||||| ||| | |||||||| || || Sbjct 118 AACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAG 177 Query 172563 TTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATG 172622 |||||||||||| | | | ||||||||| |||| | || || |||||| || | || Sbjct 178 TTTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTG 237 Query 172623 GTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAA 172664 |||||| || | ||| | |||| ||||||||||| ||||| Sbjct 238 GTTAACTGCTCTTGGTGTTAGTACTATGGCATTCAA-CTTAA 278 >seq49 Length=2147 Score = 100 bits (110), Expect = 3e-16 Identities = 118/156 (76%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 172643 GTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGAT-GCTAAC 172701 |||| |||||||||||| | || |||||||||||||||||||| ||||| ||| || || Sbjct 2142 GTACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAA- 2084 Query 172702 GGTAAGATTGTTC-CTACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGT 172760 | | || || || |||| |||| || | ||| | || | ||||||||||||| Sbjct 2083 -GGCCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGT 2025 Query 172761 TATGCATGAAAGAAATGCACACAACTTCCCATTAGA 172796 ||||| ||| | || || ||||||||||| |||| Sbjct 2024 AATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 1989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587876320923760