Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq566 544 9e-150 seq288 446 2e-120 seq620 165 9e-36 seq49 107 2e-18 >seq566 Length=2184 Score = 544 bits (602), Expect = 9e-150 Identities = 729/1006 (72%), Gaps = 6/1006 (1%) Strand=Plus/Plus Query 168493 TCGATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTT 168552 ||||||||||| | ||||| ||||||||||| ||| |||||||||| || ||| || || Sbjct 602 TCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGCCTT-TTATTA 660 Query 168553 TTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGT 168611 ||||| || || | |||||| |||| || ||| | || || || |||| || || | Sbjct 661 TTCCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCT 720 Query 168612 TGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCA 168671 |||||||| || || || ||| ||| || || || || ||||| | |||| || Sbjct 721 TGGTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGCAACTTCTTAACTGTAGCG 780 Query 168672 GTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCA 168731 || || || ||| | |||||||||||| | | | | ||||| ||||| ||| Sbjct 781 GTATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGGGACCTGAAGCA 840 Query 168732 CAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCAC 168791 ||||| |||||| | ||| |||| |||| ||| | ||||||||| | || | || Sbjct 841 CAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATCGCATTACAT 900 Query 168792 GGGGCTTTCGCTCTAATCGGTTTCATGCTT-CGTCAGTTTGAACTGGCACGTCTCATCGG 168850 || || || | | |||| || ||| || || ||||| || || | || ||||| | || Sbjct 901 GGTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGG 959 Query 168851 TATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTT 168910 ||| ||||| || || || ||||| |||||||| ||||| || || || ||| || || Sbjct 960 TATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTCGTTTCTGTATT 1019 Query 168911 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGC 168970 | ||||| ||||| || ||| | |||||||| ||||||||| ||| ||||| |||| Sbjct 1020 CTTAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGC 1079 Query 168971 AATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCA 169030 || ||||| ||| | | ||| ||||||| ||||||||||||||||| || ||||| || Sbjct 1080 TATTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAACCCATTCCA 1139 Query 169031 TATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTAC 169090 ||||||||| |||||||| ||||| || || || || | ||||| |||||||| | ||| Sbjct 1140 TATGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATTCATGGAGCTAC 1199 Query 169091 AGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAG 169150 ||||| || || || | | |||||||||| ||||| || ||| || ||| ||| Sbjct 1200 TGTAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTT-ACAC 1258 Query 169151 C-ACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCT 169209 | || || ||| || || ||||||||||| || || || | ||||||||||| || | Sbjct 1259 CAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTT 1318 Query 169210 TTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTA 169269 | ||| | || ||| ||| || | ||| | || ||||| ||| | |||||||| || | Sbjct 1319 TCGGTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAA 1378 Query 169270 TGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATG 169329 ||| | ||||||||||| | |||||| | ||| | || | || | | || || | Sbjct 1379 CAGGTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACG 1438 Query 169330 ACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCA 169389 |||| || || ||||| | | ||||| ||||||||||| ||||| || |||||||| | Sbjct 1439 ACTTCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTA 1498 Query 169390 AGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATG 169449 | || ||| | || ||||||||| || | ||||| | || | || ||||| |||| Sbjct 1499 AAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGACCAACCACATG 1558 Query 169450 AGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 | |||||||| ||||| ||||| || | || || || || ||||| Sbjct 1559 AAAACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 1604 >seq288 Length=849 Score = 446 bits (494), Expect = 2e-120 Identities = 442/572 (77%), Gaps = 0/572 (0%) Strand=Plus/Plus Query 167079 TGGGAATCCTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTC 167138 ||||| ||| ||| |||| | || ||||| | |||||| | || ||||||||||| Sbjct 276 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 335 Query 167139 GGCGTTCTGATGATCCCTACGTTGCTTGCAGCAACCATCTGTTTCATCATCGCCTTCGTC 167198 || ||| | |||||||| || || | |||| || | ||| ||||||||||| || || Sbjct 336 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTTATC 395 Query 167199 GGTGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTAT 167258 | ||| ||||| || || ||||| |||||||| |||||||||||||| ||||| | || Sbjct 396 GCTGCACCTCCAGTTGATATCGACGGTATCCGTGAACCAGTTGCTGGATCACTTTTATAC 455 Query 167259 GGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTC 167318 || |||||||||||| ||||||||||| ||||| |||||| |||| ||| |||||||| Sbjct 456 GGAAACAACATCATCACTGGTGCAGTTATTCCTAGTTCTAACTCTATCGGTATTCACTTC 515 Query 167319 TATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAA 167378 || || | |||||||| || | | ||||||||| | ||||| |||||||||| |||| Sbjct 516 TACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 575 Query 167379 CTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTC 167438 || ||||| || |||||| | | || | | ||| ||||| ||||| |||||||| Sbjct 576 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 635 Query 167439 TCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCA 167498 |||||| | || |||||||| ||||| | || || | ||| |||||||| |||||| Sbjct 636 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 695 Query 167499 GCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCT 167558 |||||||| |||||| | || || || |||| |||||| |||||||| | |||||| Sbjct 696 GCATCTGCAGTATTCTTAGTTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCT 755 Query 167559 CTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTG 167618 | ||||| |||||||| ||||||| |||| | || ||||||||||| |||||||| || Sbjct 756 TTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 815 Query 167619 ATGCACCCCTTCCATATGCTCGGCGTTGCTGG 167650 |||||||| ||||||||| || |||||||| Sbjct 816 ATGCACCCATTCCATATGGCTGGTGTTGCTGG 847 >seq620 Length=282 Score = 165 bits (182), Expect = 9e-36 Identities = 183/241 (76%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 167655 TTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGT 167714 || || || ||| | |||||||| |||||||||||||| || || ||| | | ||| Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 167715 GAAACCACCGAA-ACTGAGTCCCAG--AACTATGGTTACAAGTTCGGTCAGGAAGAAGAG 167771 ||||| ||| || | || | | ||||| |||||||| ||||| || |||||||| Sbjct 62 GAAACT---GAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAA 118 Query 167772 ACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCC 167831 || || |||||||| ||||| || |||||||| || || | |||||||||||||| Sbjct 119 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGT 178 Query 167832 TTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGG 167891 ||||||||||| || | | ||||||||||| || || ||||| ||||| ||||||||| Sbjct 179 TTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 238 Query 167892 T 167892 | Sbjct 239 T 239 >seq49 Length=2147 Score = 107 bits (118), Expect = 2e-18 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 167921 ATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCT 167980 ||||||| | || ||||||||||||||||| || | ||||||| || || | Sbjct 2132 ATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAAGGCCGCGTGAT 2073 Query 167981 GCCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCG 168040 |||||||| ||| | |||||||||||| | | ||||||||||| |||||||| || Sbjct 2072 CAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACG 2013 Query 168041 TAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA-GTCCACTCCTGTGGCACTCA 168099 ||| || |||||||||||||| || | || | || | || | |||||| ||| | | Sbjct 2012 TAACGCGCACAACTTCCCTCTAGATTTAGCCGTATCTAATGTTC-TTCCTGTTGCATTAA 1954 Query 168100 CCGCACCTGCT 168110 ||| |||||| Sbjct 1953 ACGCTCCTGCT 1943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560441282188400