Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq288 354 1e-92 seq620 203 5e-47 >seq288 Length=849 Score = 354 bits (392), Expect = 1e-92 Identities = 405/544 (74%), Gaps = 0/544 (0%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| | |||||||| ||||| | ||||| || | | || Sbjct 306 ACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACA 365 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 ||||| | || |||||| | || || |||||||||||||| || ||||||||||| ||| Sbjct 366 GCTACAAGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTATC 425 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || ||||||||||| || | | || || |||||||||||| ||||||| ||| | Sbjct 426 CGTGAACCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACTGGTGCAGTTATT 485 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||||||| ||| | ||||| | ||||||||||| | |||||||| || | | ||| Sbjct 486 CCTAGTTCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGAC 545 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 || ||||| ||||| ||||| |||| |||||| || | || |||||| | | ||| | Sbjct 546 GAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTA 605 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| ||| | | ||||||||| ||| | ||||| ||| | |||||||| Sbjct 606 GCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATT 665 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 | || |||| ||| || || ||| |||| || | |||||||||| | || || ||| || Sbjct 666 TTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATC 725 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 || || ||| |||||||||| |||||| | || || ||||| || ||||||| |||| Sbjct 726 GGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATG 785 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 || || ||||| || || ||||||||||| |||||||||||||| ||| ||||| ||| Sbjct 786 TTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCT 845 Query 215855 GGTG 215858 |||| Sbjct 846 GGTG 849 >seq620 Length=282 Score = 203 bits (224), Expect = 5e-47 Identities = 215/281 (77%), Gaps = 7/281 (2%) Strand=Plus/Plus Query 215861 TTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGA 215920 || ||||| || || ||| ||| ||||||||||| ||||| |||||| | ||||| | Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 215921 GAGACAACTGAGCA---AGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAA 215977 || |||||| | | |||| |||||||||||||| ||||||||||| || ||| Sbjct 62 GA---AACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAA 118 Query 215978 ACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCT 216037 || |||||||||||||||||||||||||||||||| || | |||||||||||||| | Sbjct 119 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGT 178 Query 216038 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGG 216097 ||||||||||| | | | ||||||||| | || || | || ||| | |||||||| Sbjct 179 TTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 238 Query 216098 GCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAA 216138 |||||| | ||||| |||||||| ||||| ||||| Sbjct 239 TTAACTGCTCTTGGTGTTAGTACTATGGCATTCAA-CTTAA 278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744860022045680