Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq566 515 5e-141 seq288 417 1e-111 seq620 194 2e-44 seq49 136 5e-27 >seq566 Length=2184 Score = 515 bits (570), Expect = 5e-141 Identities = 731/1012 (72%), Gaps = 12/1012 (1%) Strand=Plus/Plus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | ||||| ||||| || || ||| | || ||||| || || || || || Sbjct 604 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGCCTTTTA-TTATT 662 Query 183253 CCCA-CTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTG 183311 |||| | || | |||||| |||| || ||| | || || || |||||||||| ||| Sbjct 663 CCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 722 Query 183312 GTATACCCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTG 183370 |||||| |||||| | || ||||| || || ||||| ||| ||||| | || | ||| | Sbjct 723 GTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGC-AACTTCTTAACTGTAGCGG 781 Query 183371 TCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTC 183430 | || || ||||| || |||||||||||| | | ||| | ||||| ||||| | | Sbjct 782 TATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGGGACCTGAAGCAC 841 Query 183431 AAGGGGACTTTCA-ACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCAC 183489 |||| || ||||| || ||| ||| |||| ||| | ||| |||| | ||| | || Sbjct 842 AAGGAGA-TTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATCGCATTACAT 900 Query 183490 GGTGCCTTTGCTCTCATTGGTTTCATGCTT-CGACAGTTTGAACTTGCTCG-CTTGATTG 183547 ||||| |||| | | ||||| ||| || || || || || || | ||||| |||| | | Sbjct 901 GGTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTG-TAG 958 Query 183548 GTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTAT 183607 |||| ||||| || || || ||||| |||||||| |||||||| || || || ||||| Sbjct 959 GTATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTCGTTTCTGTAT 1018 Query 183608 TCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAG 183667 || | |||||||| || || || | |||||||| || || ||||| ||||| |||| Sbjct 1019 TCTTAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAG 1078 Query 183668 CAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCC 183727 | || || | ||| |||| ||| | || |||||||| |||||||| | ||||| |||| Sbjct 1079 CTATTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAACCCATTCC 1138 Query 183728 ATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCA 183787 |||||||||| || || || || |||| || ||| || | ||| || ||||| | | Sbjct 1139 ATATGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATTCATGGAGCTA 1198 Query 183788 CAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATT 183847 | ||||| || ||| | | ||||||||| || |||||||||||| || ||| Sbjct 1199 CTGTAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACAC 1258 Query 183848 CCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCT 183907 | || ||| |||||| || ||||| ||||| ||||||||| | |||||||| ||||| | Sbjct 1259 CAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTT 1318 Query 183908 TCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCA 183967 |||| || || || || || |||||| | |||||||| ||||| |||||||| || | Sbjct 1319 TCGGTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAA 1378 Query 183968 TGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATG 184027 ||| | ||| |||| |||| || | || | || | ||| | | || || | Sbjct 1379 CAGGTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACG 1438 Query 184028 ATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAA 184087 | || ||| |||||| | | ||||| ||||||||||||||||| || |||||||| | Sbjct 1439 ACTTCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTA 1498 Query 184088 AGAACATACTTCTT-AATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACAT 184146 | || || ||| || || ||||| | | ||||| | || | || ||||||||| Sbjct 1499 AAAATAT-CTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGACCAACCACAT 1557 Query 184147 GAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGAT 184198 || || ||| |||| ||||||||||| ||||| | || || || |||| || Sbjct 1558 GAAAACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAAT 1609 >seq288 Length=849 Score = 417 bits (462), Expect = 1e-111 Identities = 419/541 (77%), Gaps = 6/541 (1%) Strand=Plus/Plus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 || ||| | || |||||||||| ||||| | ||||||||||| | || | || || Sbjct 312 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 371 Query 181881 ATCTGTTTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAA 181940 | ||| |||||| | ||||| | || |||||||| || ||||||||||||||||| ||| Sbjct 372 AGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTATCCGTGAA 431 Query 181941 CCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCC 182000 || || ||||| ||||| | || || |||||||||||| ||||||| ||| | || Sbjct 432 CCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACTGGTGCAGTTATTCCTAGT 491 Query 182001 TCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGG 182060 || ||| | || ||| |||||||||||||| | ||||||||||| || | || |||||| Sbjct 492 TCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGG 551 Query 182061 CTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC- 182119 || || ||||||||||||| |||||| || || || |||||| | | || | || || Sbjct 552 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGG--TGTA-GCT 608 Query 182120 --CTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGT 182177 ||||||||||||||| ||||||||| ||||| ||||| |||||||| ||||| | Sbjct 609 TGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTC 668 Query 182178 GTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGT 182237 ||||| | ||| |||||||| |||||||||||||| ||||||||||| || || |||| Sbjct 669 GTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATCGGA 728 Query 182238 CAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTG 182297 |||||| ||||| |||| ||||| | || || || || || ||||||| ||||| Sbjct 729 CAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTA 788 Query 182298 GTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGT 182357 || |||||||| || ||||||||||||||||| || ||||| ||| ||||| || ||| Sbjct 789 GTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGT 848 Query 182358 G 182358 | Sbjct 849 G 849 >seq620 Length=282 Score = 194 bits (214), Expect = 2e-44 Identities = 215/284 (76%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 182361 TTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGT 182420 || ||||| || | || ||||| |||||||||||| | || |||||| | ||||| Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 182421 GAGACGACTGAGCAAGA-GTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 182477 || || ||| | | || | | ||||| |||||||| ||||| ||||||||||| Sbjct 62 GAAAC---TGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAA 118 Query 182478 ACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCA 182537 || || |||||||| || || || || ||||| || ||||| |||||||||||||| Sbjct 119 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGT 178 Query 182538 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGG 182597 ||||||||||| ||| | || ||||||||| | ||||| ||||| ||||| || |||||| Sbjct 179 TTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 238 Query 182598 TTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGG 182641 || || || |||||||| || |||||||||||| | || || Sbjct 239 TTAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 136 bits (150), Expect = 5e-27 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 182619 ACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 182678 || |||||||||||| | || ||||||||||||||||| || | ||||| | || || Sbjct 2140 ACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAAGGC 2081 Query 182679 CGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATG 182738 || || | ||||||||||| || | | |||||||||| | | ||||||||||| ||| Sbjct 2080 CGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATG 2021 Query 182739 CATGAGCGTAACGCACACAACTTCCCACTAGAT 182771 || || |||||||| ||||||||||| |||||| Sbjct 2020 CACGAACGTAACGCGCACAACTTCCCTCTAGAT 1988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611514089255800