Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq566 574 5e-159 seq288 410 1e-109 seq620 197 2e-45 seq49 143 3e-29 >seq566 Length=2184 Score = 574 bits (636), Expect = 5e-159 Identities = 737/1008 (73%), Gaps = 6/1008 (1%) Strand=Plus/Plus Query 166173 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTT 166232 || |||||| | ||||||||||||||||| ||| |||||||||| || ||| || || || Sbjct 604 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGCCTT-TTATTATT 662 Query 166233 CCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTG 166291 ||| || || | |||||| |||| || ||| | || || || ||||| || || ||| Sbjct 663 CCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 722 Query 166292 GTATACTCATGGACTCGCAAGCAGTTATCT-GGAGGGTGCAAACTTTCTTACTGCGGCAG 166350 |||||| |||||| | ||| ||| || | ||| ||| ||||| | |||| || | Sbjct 723 GTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGC-AACTTCTTAACTGTAGCGG 781 Query 166351 TTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTC 166410 | || || || ||| | |||||||||||| || || | | ||||| ||||| || | Sbjct 782 TATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGGGACCTGAAGCAC 841 Query 166411 AAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACG 166470 |||| |||||| | ||| ||| |||| || | ||||| ||| | || | || | Sbjct 842 AAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATCGCATTACATG 901 Query 166471 GTGCTTTTGCCCTAATTGGTTTCATGCTT-CGGCAGTTTGAAATCGCTCGTCTAGTAGGT 166529 |||| |||| ||||||| ||| || || || || || || ||||||||||| |||||| Sbjct 902 GTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGT 960 Query 166530 ATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTT 166589 |||||||| || || ||||| || || ||||| |||||||| || |||||| ||| || Sbjct 961 ATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTCGTTTCTGTATTC 1020 Query 166590 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCA 166649 | ||||| ||||| || ||| | |||||||| ||||||||| ||| ||||| |||| Sbjct 1021 TTAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCT 1080 Query 166650 ATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCAT 166709 || ||||| ||| | | ||| | ||||| ||||| ||||||||||| |||||||| ||| Sbjct 1081 ATTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAACCCATTCCAT 1140 Query 166710 ATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACA 166769 |||||||| |||||||| ||| | ||||||||||| | ||||| || ||||| | ||| Sbjct 1141 ATGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATTCATGGAGCTACT 1200 Query 166770 GTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCT 166829 ||||| ||||| || | | |||||||||| ||||| || ||| || || | Sbjct 1201 GTAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCA 1260 Query 166830 ACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTC 166889 || ||| |||||||| ||||||||||| ||||| || | | |||||||| || ||| Sbjct 1261 ACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTC 1320 Query 166890 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 166949 ||| | || || ||| || | ||| | || ||||| ||| | |||||||| || | Sbjct 1321 GGTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAACA 1380 Query 166950 GGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 167009 ||| | ||||||||||| | |||||| | ||| | || | || | | || || ||| Sbjct 1381 GGTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACGAC 1440 Query 167010 TTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAG 167069 || || || |||||||| | ||||| || ||||| || |||||||| ||||| || || Sbjct 1441 TTCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAA 1500 Query 167070 AACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAG 167129 || || | || || || ||||| | || |||||||| | || ||||| ||||| Sbjct 1501 AATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGACCAACCACATGAA 1560 Query 167130 AGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 | || |||||||| || |||||| | || | || ||||| || ||| Sbjct 1561 AACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA 1608 >seq288 Length=849 Score = 410 bits (454), Expect = 1e-109 Identities = 434/572 (76%), Gaps = 0/572 (0%) Strand=Plus/Plus Query 164755 TGGGAGTCTTTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTC 164814 |||||| || ||| ||| | ||| ||| | |||||| | || ||||||||||| Sbjct 276 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 335 Query 164815 GGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACAATTTGTTTTATTACTGCATTCATC 164874 |||||| | |||||||| || | | ||||||| || || || | || || ||| Sbjct 336 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTTATC 395 Query 164875 GCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTAC 164934 ||||| || || || || || || ||||| |||||||| || || || || || | ||| Sbjct 396 GCTGCACCTCCAGTTGATATCGACGGTATCCGTGAACCAGTTGCTGGATCACTTTTATAC 455 Query 164935 GGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTC 164994 || |||||||||||| ||||||| || |||| ||||||| | ||||| |||||||| Sbjct 456 GGAAACAACATCATCACTGGTGCAGTTATTCCTAGTTCTAACTCTATCGGTATTCACTTC 515 Query 164995 TATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAG 165054 || || ||||||||||||| | | || || ||| | |||||||||||||||||||| Sbjct 516 TACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 575 Query 165055 TTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTG 165114 | || || || |||||| | | |||||||||||||||||||| ||||| |||||||| Sbjct 576 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 635 Query 165115 TCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCT 165174 ||||| | || |||||||||||||||| |||||| | || || || ||||| Sbjct 636 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 695 Query 165175 GCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCT 165234 || | ||||| ||| | || || || |||| ||||| || |||||||||||||||||| Sbjct 696 GCATCTGCAGTATTCTTAGTTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCT 755 Query 165235 CTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTT 165294 | ||||| ||||||||||| |||| ||||| || |||||||||||||| ||||||||| Sbjct 756 TTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 815 Query 165295 ATGCATCCGTTCCACATGCTCGGCGTTGCTGG 165326 ||||| || ||||| ||| || |||||||| Sbjct 816 ATGCACCCATTCCATATGGCTGGTGTTGCTGG 847 >seq620 Length=282 Score = 197 bits (218), Expect = 2e-45 Identities = 216/284 (76%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 165331 TTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCGC 165390 || ||||| ||| | ||| ||||||||| || |||||| || || | |||| Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 165391 GAGACAACTGAA-ACAGAGAGTCAG--AACTACGGTTATAAGTTTGGACAAGAAGAAGAG 165447 || ||||||| || | | || | ||||||||||| || || |||||||||||||| Sbjct 62 GA---AACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAA 118 Query 165448 ACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCC 165507 || || |||||||| ||||| ||||| ||||| || ||| | || ||||||||||| Sbjct 119 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGT 178 Query 165508 TTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGG 165567 |||||||| || ||| | | ||||||||| | || || ||||| || || ||||||||| Sbjct 179 TTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 238 Query 165568 TTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGG 165611 || ||||||||||||||||| || |||||||||||| | || || Sbjct 239 TTAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 143 bits (158), Expect = 3e-29 Identities = 127/159 (80%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 165582 TGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAG 165641 |||||| || |||||||||||| | || ||||||||||||||||| || |||||||||| Sbjct 2147 TGTTAGTACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAG 2088 Query 165642 TCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGA 165701 || | | ||| |||||||||||| || | |||||||||| | | |||||||| Sbjct 2087 CCAAGGCCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGA 2028 Query 165702 AGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGA 165740 ||| ||||| || |||||||| ||||||||||| || || Sbjct 2027 AGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 1989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563493174323840