Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq288 426 2e-114 seq620 176 5e-39 seq49 82.4 9e-11 >seq288 Length=849 Score = 426 bits (472), Expect = 2e-114 Identities = 428/556 (77%), Gaps = 0/556 (0%) Strand=Plus/Plus Query 169698 TTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCC 169757 |||| | || |||||| | ||||| | || | |||||||||||||| || |||||||| Sbjct 293 TTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCC 352 Query 169758 ATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGA 169817 | ||||| |||| ||| |||||| ||| | ||||| ||||| || || || || || Sbjct 353 AACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGA 412 Query 169818 CATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTC 169877 ||||| || ||| | ||||| || || || ||| | | || || |||||||||||| | Sbjct 413 TATCGACGGTATCCGTGAACCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCAC 472 Query 169878 TGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGC 169937 |||||||||| |||| ||| ||| | |||||| | |||||||| || |||||||||| Sbjct 473 TGGTGCAGTTATTCCTAGTTCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGC 532 Query 169938 AGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTT 169997 || || |||| |||||| | || |||||||||||||| ||| | || | || ||||| Sbjct 533 TGCGTCTTTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTT 592 Query 169998 CCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTAT 170057 | | | || | || ||||||||| | | |||||||| ||||||||||| || Sbjct 593 CTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGAT 652 Query 170058 GCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTT 170117 |||||||||||| | ||||| | || |||||||| | ||||||| || |||||||| Sbjct 653 GCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTT 712 Query 170118 AGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTAC 170177 ||| || || |||| || || ||||| || || |||||| ||||||| || ||||| Sbjct 713 AGTTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTAC 772 Query 170178 ATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATAT 170237 || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 773 TTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATAT 832 Query 170238 GGCAGGGGTTGCTGGT 170253 ||| || ||||||||| Sbjct 833 GGCTGGTGTTGCTGGT 848 >seq620 Length=282 Score = 176 bits (194), Expect = 5e-39 Identities = 195/260 (75%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 170278 GCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCA 170337 || ||||||||||| |||||||||||| | ||||| | || || ||| || || Sbjct 23 GCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGAAACTGAAGACGGCGTATCT 82 Query 170338 CAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACAT 170397 ||||| || |||||||||||||||||||||||||| |||||||| || || ||||| Sbjct 83 GCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACAC 142 Query 170398 GGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCAC 170457 || |||||||| | | ||||||||||| || || || ||||| |||| | | ||| Sbjct 143 GGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCTCGTGCTTTACAC 202 Query 170458 TTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACA 170517 |||||| | ||| | | || || ||| | |||||||||||| | | ||| || | || Sbjct 203 TTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTACT 262 Query 170518 ATGGCATTTAACCTTAATGG 170537 |||||||| ||| | ||||| Sbjct 263 ATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 82.4 bits (90), Expect = 9e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 170515 ACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGT 170574 || |||||||| ||| | ||||| || ||||||||||| || | || ||| | || Sbjct 2140 ACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAAGGC 2081 Query 170575 AAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATG 170634 || | || ||||| ||| || | ||| | || | ||||||||||||||||| Sbjct 2080 CGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATG 2021 Query 170635 CATGAGCGTAATGCACACAACTTCCCACTTGACTTGGC 170672 || || ||||| || ||||||||||| || || || || Sbjct 2020 CACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGC 1983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582674668290400