Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq13286 127 1e-24 seq5368 114 8e-21 seq22358 107 1e-18 >seq13286 Length=1322 Score = 127 bits (140), Expect = 1e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||| | ||| || ||||| ||||| ||||||||||| | || | || Sbjct 1103 CAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGCCCGTC 1044 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||||||| || || || || || || || |||||||| |||| | ||||||||||| Sbjct 1043 CTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 984 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| || || ||| | |||| || | || ||| || |||| || ||||| Sbjct 983 CTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCGAGCGTGATGGT 924 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCG 34986 ||| ||||| || ||||| || ||||| ||||| |||| Sbjct 923 TTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTTCG 886 >seq5368 Length=5397 Score = 114 bits (126), Expect = 8e-21 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 34825 CATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34884 |||| |||||||| || |||||||| || ||||| |||||||| | || | ||||||| Sbjct 2601 CATCCTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCT 2660 Query 34885 TGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTA 34944 |||| ||||||||||| ||| | || | || | || ||| ||||||| ||| | Sbjct 2661 TGTCCTGGATCTTCTGTTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGA 2720 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGT 34987 |||| || ||||| || ||||| || ||||| ||||| || || Sbjct 2721 TGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTTTGT 2763 >seq22358 Length=3586 Score = 107 bits (118), Expect = 1e-18 Identities = 156/217 (72%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || || || ||||| |||||||| || | || | || ||| Sbjct 3308 ACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCC 3249 Query 34833 AGCTGTTTTCCG-GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || || || || || || |||||||| |||| | ||||||||||| Sbjct 3248 AGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 3189 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| || || || || || || | || | || ||| ||||||| ||| ||||| Sbjct 3188 GATCTTTTGCTTCAC--ATTCTCGATGGTGTCGCTGGGCTCGACATCGAGGGTGATGGTC 3131 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCG 34986 || ||||| || ||||| || ||||| ||||| |||| Sbjct 3130 TTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTTCG 3094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324539471574648