Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq288 376 3e-99 seq620 205 1e-47 seq49 113 5e-20 >seq288 Length=849 Score = 376 bits (416), Expect = 3e-99 Identities = 430/575 (75%), Gaps = 2/575 (0%) Strand=Plus/Minus Query 84391 CACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGA 84450 |||||||||| || ||| || || || |||||||| ||||| ||||| || ||||| | Sbjct 849 CACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATA 790 Query 84451 CAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTT 84510 | | |||| ||||||| || || || ||||| | ||||| ||||||||||| ||||| Sbjct 789 CTAACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTT 730 Query 84511 GCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAA 84570 | |||| || || || | |||||| |||||||| || || |||||||| ||| |||| | Sbjct 729 GTCCGATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTA 670 Query 84571 CACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAG 84630 | | ||||| |||||||| || | ||| || ||||||||||||||| |||||||| | Sbjct 669 CGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTA-G 611 Query 84631 CAAA-TGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGC 84689 ||| | |||| | | |||||| || || |||||||| ||||| ||||| || || ||| Sbjct 610 CAAGCTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGC 551 Query 84690 CATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAG 84749 || ||||| | | || |||||||||| || ||||| || | ||| |||| ||||| Sbjct 550 CACTCGTCTAAAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCGATAGAGTTAGAA 491 Query 84750 GATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGC 84809 |||| || ||||||| ||||||||||||||||| | || || ||||| ||||| Sbjct 490 CTAGGAATAACTGCACCAGTGATGATGTTGTTTCCGTATAAAAGTGATCCAGCAACTGGT 431 Query 84810 TCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAAACAGACA 84869 |||||||||||||| ||||||||||| |||||| | | || || |||||||| ||| Sbjct 430 TCACGGATACCGTCGATATCAACTGGAGGTGCAGCGATAAAAGCGATGATGAAGCAGCTT 371 Query 84870 GTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTG 84929 || || | | || ||||| ||||| | | || |||||||| | || | |||||| Sbjct 370 GTAGCTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTT 311 Query 84930 TTAGTGGAGGTGACCCAATCACAGAAGTTCTGCCA 84964 | ||| |||| |||| |||||| || ||| Sbjct 310 TCTGTGCTAGTGATCCAAGAGCAGAAGCGCTCCCA 276 >seq620 Length=282 Score = 205 bits (226), Expect = 1e-47 Identities = 214/281 (76%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 84108 CCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACT 84167 ||||| | || |||||||| || |||||||| ||||||| ||||| || || || ||| Sbjct 282 CCATTTAAGTTGAATGCCATAGTACTAACACCAAGAGCAGTTAACCAGATACCTACAACT 223 Query 84168 GGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAG 84227 ||||||||||| ||||| ||||| | || |||| |||||||| || || |||||| Sbjct 222 GGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGAGAGTTGTTGAAACTCGCGTATTGGAAG 163 Query 84228 ATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCG 84287 || | ||| || ||||| ||||| ||||| || || || |||||||| |||||||| ||| Sbjct 162 ATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGTCCG 103 Query 84288 AACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTG 84347 || |||||||| ||||| || || ||| |||||| ||||||| | ||| || Sbjct 102 AATTTGTAACCGTAGTTAGCAGATACGCCGTCTTCAGTTTCACGGATTAAACTAGATGTT 43 Query 84348 ACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAA 84388 ||||| ||||| ||||| ||| ||||| || ||||| || Sbjct 42 ACAAGAGAACCGTGCATAGCACTGAATAAAGACCCACCAAA 2 >seq49 Length=2147 Score = 113 bits (124), Expect = 5e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 83936 AGGTGCAGTTAGTGCTACAGGAGTAACAGAAACTGACGCAAGATCCAACGGGAAGTTATG 83995 ||| || ||| ||| |||||| |||| | | || | ||| | |||||||| || Sbjct 1946 AGGAGCGTTTAATGCAACAGGAAGAACATTAGATACGGCTAAATCTAGAGGGAAGTTGTG 2005 Query 83996 TGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGTACATCGGCCCA 84055 ||||||||||||||||| ||||||||||| | | ||||| || | | || ||||| Sbjct 2006 CGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGGTTGATAATGTCAGCCCA 2065 Query 84056 GGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAAATCCATTCAG 84115 || |||| || ||| ||||||||| |||| || |||||||| || ||||| | Sbjct 2066 AGTGTTGATCACGCGGCCTTGGCTATCAACAACCGATTGGTTGAAGTTGAAACCATTTAA 2125 Query 84116 ATTAAATGCCATGGTGCTAACA 84137 || |||||||| || |||||| Sbjct 2126 GTTGAATGCCATAGTACTAACA 2147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571103710372280