Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq288 313 7e-81 seq620 122 3e-23 >seq288 Length=849 Score = 313 bits (346), Expect = 7e-81 Identities = 418/575 (73%), Gaps = 6/575 (1%) Strand=Plus/Plus Query 25793 TGGGAGAGGTTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTC 25852 |||||| | || || ||| | || || || || |||||| | || | || |||||| Sbjct 276 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 335 Query 25853 GGGGTGCTTATGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATC 25912 || || | ||||| || ||| | |||| || | || || || | || || ||| Sbjct 336 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTTATC 395 Query 25913 GCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTAC 25972 || ||||| || || ||||| || || || ||||| |||||| | || || | | ||| Sbjct 396 GCTGCACCTCCAGTTGATATCGACGGTATCCGTGAACCAGTTGCTGGATCACTTTTATAC 455 Query 25973 GGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTT 26032 |||||||| || || | || ||||| | || |||||| | ||||| | || || Sbjct 456 GGAAACAACATCATCACTGGTGCAGTTATTCCTAGTTCTAACTCTATCGGTATTCACTTC 515 Query 26033 TACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAA 26092 ||||| | |||||||||| | | ||||||||||| ||||| || || || || ||| Sbjct 516 TACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 575 Query 26093 CTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCA-GGGA-GACAGTGGGAAC 26150 || | | || ||||||||| |||| ||||| || || |||| | | ||||||| Sbjct 576 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTA--CATGGGACGTGAATGGGAAC 633 Query 26151 TATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCG 26210 | ||| | |||| ||| | || ||||| || || || | |||| ||| || | | Sbjct 634 TTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTG 693 Query 26211 CAGC-TCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATG 26269 |||| ||| ||||| ||||||||||| || |||||||||| || || |||||| ||| Sbjct 694 CAGCATCT-GCAGTATTCTTAGTTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATG 752 Query 26270 CCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATA 26329 ||| | ||||| ||||||||||| ||||| ||||| ||||||||||||||||| || || Sbjct 753 CCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATT 812 Query 26330 CTCATGCACCCATTCCATATGGCTGGTGTTGCTGG 26364 || |||||||||||||||||||||||||||||||| Sbjct 813 CTTATGCACCCATTCCATATGGCTGGTGTTGCTGG 847 >seq620 Length=282 Score = 122 bits (134), Expect = 3e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26453 AATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGG 26512 || || || || || || || ||||| ||||| || || || || || ||||||||||| Sbjct 86 AACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGT 145 Query 26513 TACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTC 26572 |||||||| | ||||| || || || |||||||| || ||| ||| || | || ||| Sbjct 146 TACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCTCGTGCTTTACACTTC 205 Query 26573 TTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATG 26632 || | ||| ||||||| ||||| || || ||| | || || | ||| | | || ||| Sbjct 206 TTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTACTATG 265 Query 26633 GCATTTAACCTAAATGG 26649 ||||| ||| ||||||| Sbjct 266 GCATTCAACTTAAATGG 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146684947132584